Tsal001670.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tuberolachnus salignus
Gene Symbol
Hivep1
Assembly
GCA_956483605.1
Location
OY101429.1:30355454-30362199[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 8 1.9e-05 0.0021 18.8 2.5 1 23 67 89 67 89 0.98
2 8 0.00029 0.031 15.1 3.9 1 19 95 113 95 119 0.92
3 8 0.00047 0.051 14.4 0.5 3 21 226 244 225 245 0.95
4 8 1e-06 0.00011 22.8 1.3 1 23 543 565 543 565 0.99
5 8 2.6e-06 0.00028 21.5 2.7 1 23 571 595 571 595 0.92
6 8 2.8e-06 0.0003 21.4 0.3 2 23 828 849 827 849 0.97
7 8 0.00017 0.019 15.8 3.3 1 22 855 876 855 879 0.91
8 8 0.0041 0.44 11.5 1.4 1 23 899 923 899 923 0.92

Sequence Information

Coding Sequence
ATGAGTCCCAGCCACAACGAGAACAAAAaTCTAATGTGTCATGCGGCAGAAAAATCTTTGCCAGCAGCTCCTTTATCAGCCGGTAACTACTTGCATAAAAAGTTCAAAAAAGTTGCTACAGCTAATGATTGCCCCGAAGTTGCTGTTCCTACACCCGTATTTTCCGCAGATGAATATTCTGTTGAAGGTGTATGGCGACATAAATGTCCATATTGTAAAACTGTATGTACCAAGCCAAGTGCGCTGGCCAAACATTTGCAAGTGCACTCTGATGAACGTCCATTTCCATGTGAAACATGTGGATTtgcttttaaaacaaaaagtaatttatcgaaacactGTAAATCACAATCACACACTGAACGATTGGCTAAAGAAGAACCAGAAGTGGCTAAGCCAAAAATCTATAAACCAAAATTTCGCACGGGTTCAATATATACAAAACTGGAAGAGGATAGATCAAAAAATACTGAACCAGTTAAGGAAATAGTACAGATATTACCATATAAACAAGATGAAGATTCTTCTCAGCCTTTAAATTTATCCATAGCATCGATTAAAAAATGCCATGATAAAATGTCTCCTGTTGAGAATGGCCAAACTGAACTTAAAGGTGTATACAAATTGCTTTTGAATCAGATTATTAAATGCAATGTAAATAAAGATCATCCCTTTTGTGAAATGTGTGGCTTGAAATTCAATAGTCAAGAAGATTTGGTTAGACATATTTGTGATCGAAGTCCTAATGGAGTTATAATGCAACTTCCAGATCCCAAGACTGTAGCCATGCCACTTCCATCACCCGGTCCTCTATTGGGACGAACGCCTCTAGTTGAGTTTCACAGGTCAAAGGAACCTGATATTCCAAAATCAGTCTTGGTGCGTATGGGTAATTCAGGACAACAGCAGGAAATGCTTGCCATTTTCCCGGGTAGCCGAGCTATACCTTTTGTGCCTGGAATGCCTGGTCCACATACAGCAATGCCTCCTCAACCTCGGCCACAGTATGAACCAAAACAGAATGAACCGCCTCCTCCGAAAAAGCCTAGAATGGAAGAAGACTTTGTAGCATCTACATCACATCAtcagATTCTTACAACTACTGTAACGTCTGTAACTACCACTACAGTGGCTCAGAAATTTGTACGGCCAACATCACTAGCATTCAAACCAGGAACATTCTGTACTAGCCGATTGTTGCCTGTAGTTAGTCCCGACACACCAAGACCAAATAAGAGTTATCAACAATTGTATTTCAATGGCCACGCTTATACATATCTCGGATTAAAATGCTCGACAAGAGTATTTTATTGCACATTGACCAAATGTCAACCTACTTACACAATACTTCCAGAAGTCAATACTATATCAATGTACTCGAATTGGAAGatTTGTTCTGATATGGGAAGTAATATGTTAGGTGTTCGAGGTATGGATTTATATAACTCGAGTCAGCGTAATCATAAATATACCCAGGCTGGTCAATCACATGACTATATAGTTGCTCATTCTTCTTACAAGCATCAAAAAGTGTCTGAATCGTCGTTAGGTAAATTAAAGATTTGTCCTGGAGGTTTTGAATCCAATGAAGATTATGTATATGTAAGAGGCAGAGGAAAGGGAAGATATGTATGTGCTGACTGTGGAATACGCTGTAAAAAACCTTCAATGCTCAAGAAACATATCAGAACTCATACAGACTTAAGGCCATACACTTGTACGCTTTGTACGTTCAGttttaaaactaaaGGAAATCTGACAAAACATATGAAATCAAAAGCACATTTCAAAAAAGGAGTTGAACAGGAACAGGATCAAAATCAAATGTCCATGGACGATATCAGACAACTTGATTCTGAAGATATGGAAGACTATTCAGAAGATAATatggatgatgatgatgatattgATGATGAAGATGATGATGAGGAAGCGGTAGATAAACTCGGGTGGCGTAAAACTCAATCAGATTTTGATGCTGCACGTTCGTTATTAAGACTTTCACAAGTCTGCCCATCACAAATACCTCACATAAATCATGCAAAAGCCGGAATTTTGCCTTATGATTACCGGCCAGTATCATATCCATATCTATCTCCTTTATTAGTGACTGAACCTGAAGTTCTAAATAACCATCAAAACCAAAAACCAATTAGTTCACCTTTACAATCTGGAAACCATCTTCAAGCAGGTGACGTATCACCTGTTCAATCTACAACTATTTTGAATAGTACAGAAGTAATTAGAAAAACACCCACAGAGTTAAAGCATAatgtaaatgcaattttaaatagtAGCCCAAAAGTTGTTGCCAATAAACCAATAGATCTTTCACGCTTTGGAGGTAGTAAAGAAcctgaacaaataaataaaccacaggTAATAGTACAATCCCCTAAAAAACCTAAAGCATTATTTCGACAACCTACAACAAATGGTCCATCACAAAAGTATACTAGtatTCTTGAGGATGGACGTAGTAAATGTATGGTGTGCGATAAGGTGTTCAACAAACCTAGTCAATTACAATTGCACatcaatatacattattttgagCAACCATTCCGATGTGAAAGCTGCAAAGAATCATTCCGAACTAAACatttgcttcaaaaacatttgGACTCTAGCTCACATTTgaataaagTGAATATGATGTCAACTCAAGGCCCTGTTATTAAAAATCCTAGACCATTTGAGTGTGCTGATTGTCAAGTTGGTTTTCGAATTCATGGACATTTAGCTAAACATTTACGATCCAAAATGCATATCCTTAAATTAGAATGCTTGGGAAAGATACCGTTTGGAACATATTCTGAAATTGAACGTTTAGGGTTAAATTTGAATGATATTGATACAACTGACTGTGACAGTGCTCTTAAGAGCTTACAAGCTAGCCAAAAGGCCATATAA
Protein Sequence
MSPSHNENKNLMCHAAEKSLPAAPLSAGNYLHKKFKKVATANDCPEVAVPTPVFSADEYSVEGVWRHKCPYCKTVCTKPSALAKHLQVHSDERPFPCETCGFAFKTKSNLSKHCKSQSHTERLAKEEPEVAKPKIYKPKFRTGSIYTKLEEDRSKNTEPVKEIVQILPYKQDEDSSQPLNLSIASIKKCHDKMSPVENGQTELKGVYKLLLNQIIKCNVNKDHPFCEMCGLKFNSQEDLVRHICDRSPNGVIMQLPDPKTVAMPLPSPGPLLGRTPLVEFHRSKEPDIPKSVLVRMGNSGQQQEMLAIFPGSRAIPFVPGMPGPHTAMPPQPRPQYEPKQNEPPPPKKPRMEEDFVASTSHHQILTTTVTSVTTTTVAQKFVRPTSLAFKPGTFCTSRLLPVVSPDTPRPNKSYQQLYFNGHAYTYLGLKCSTRVFYCTLTKCQPTYTILPEVNTISMYSNWKICSDMGSNMLGVRGMDLYNSSQRNHKYTQAGQSHDYIVAHSSYKHQKVSESSLGKLKICPGGFESNEDYVYVRGRGKGRYVCADCGIRCKKPSMLKKHIRTHTDLRPYTCTLCTFSFKTKGNLTKHMKSKAHFKKGVEQEQDQNQMSMDDIRQLDSEDMEDYSEDNMDDDDDIDDEDDDEEAVDKLGWRKTQSDFDAARSLLRLSQVCPSQIPHINHAKAGILPYDYRPVSYPYLSPLLVTEPEVLNNHQNQKPISSPLQSGNHLQAGDVSPVQSTTILNSTEVIRKTPTELKHNVNAILNSSPKVVANKPIDLSRFGGSKEPEQINKPQVIVQSPKKPKALFRQPTTNGPSQKYTSILEDGRSKCMVCDKVFNKPSQLQLHINIHYFEQPFRCESCKESFRTKHLLQKHLDSSSHLNKVNMMSTQGPVIKNPRPFECADCQVGFRIHGHLAKHLRSKMHILKLECLGKIPFGTYSEIERLGLNLNDIDTTDCDSALKSLQASQKAI