Dpla007405.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drepanosiphum platanoidis
Gene Symbol
Hivep1
Assembly
GCA_948098885.1
Location
OX402528.1:7620073-7631101[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 8 0.00011 0.009 16.2 3.9 1 23 91 113 91 113 0.97
2 8 7.3e-05 0.0058 16.8 3.4 1 19 119 137 119 143 0.92
3 8 0.22 18 5.9 3.0 3 21 253 271 252 272 0.95
4 8 9.8e-07 7.8e-05 22.7 1.3 1 23 574 596 574 596 0.99
5 8 2.3e-06 0.00018 21.6 3.1 1 23 602 626 602 626 0.92
6 8 2.6e-06 0.00021 21.4 0.3 2 23 859 880 858 880 0.97
7 8 0.00018 0.014 15.6 3.4 1 22 886 907 886 910 0.91
8 8 0.0038 0.31 11.4 1.4 1 23 930 954 930 954 0.92

Sequence Information

Coding Sequence
ATGAGCGAACGCGTGTGGAAGGAGGTTTGGATTGATGTGCGTTTTGCTTACGTGGTCGACGACGCGATCGAGATGAGTCCTAGCCACAACGAGAACAAAAGCATAATGTGTCTTTCTGACAAGTCTTCGCCATCTGCTCCTTTATCGGCTGGAAATTACTTGCATAAAAAATTTAAAAAGGTCGCTACTGCAGAAGATTGTCCTGAAGTTGCTGCAGTCCCTACGCCTGTATTATCCACAGACGAATATTCTGTCGAAGGTGTATGGCGACACAAATGTCCATATTGTAAAACTGTTTGCACTAAGCCTAGTGCTCTTATCAAACATTTACAATTTCACTCAGACGAACGTCCATTTCCTTGTGAGACATGTGGATTATCTTTTAAATCAAAAAGTAATCTGACAAACCATTGTAAATCACAATCACATACAGAAAGGTTAGCTATAGAAGAACCCGAGGAAGTTAAGCCAAAAATATACAAACCAAAATTTCGTACAGCTTTAATATACACTAAATTTGAAGAAGATAGTTCAAAGGATCCTGAACCAGTTACAGAAACAGTGCCAATATTATCATATAAACATGAAGAGGATTCATCTCAGCCTTTGAATTTGTCTGTAGCATCAATCAAAAGATGTCAGGATAAAATTTCTCCTATTGAAGAAAATGGCCAAACTGAGCTAAAAGGTGTTTACAAATTGTTATTGAACCAAATCATTAAGTGTAATGGTAATGACAACAAAGAGCAGCCTTTTTGTGAGACATGTGGTTTGAAATTTAATTGCAAAGAAGATCTGATGAGGCATATTTGTGACATAAGTCCAAATGAAATTAAGTATACAGAGTCCAAGACTGTAGCCATGCCACTTCCATCACCTGGTCCATTATTGGGACGCACACCTCTTGTTGAATTTCACAGAACAAAGGAACCCGATGTCCCAAAGCCATTAATTGTACGTACAGGTATTAACTTAGTACAACAGCAGCAGGAAATGATCGCCATTTTCCAGGGTAGCCGAGCTATACCTTATGTACCAGGTATGCCGGGTCCACATACAGCAATGCCTCATCAACTCCGGCCACAGTATGAGCCAAAACAGACTGAATCTCCACCTTCAAAAAGACAGAAAGTGGAAGAAGAATTTTTGGTCTCAACATCCCATCATCAGATTCTAACTACTACTGTAACCACTAGTACCGCAGCTCAAAAATTTGTTCGGCCAACGTCATTGGCATTCAAACCAGGAACATTCAGTACTAATCGCATGTTACCCGTGGTTAGTCCAGATACTCCAAGACCAAAAAAGAGCTACCAACAGTTGTATCTAAATGGTCATGCCTACACATATCTCGGATTAAAATGTTCTACTAGAGTATTTTATTGTACACTTACCAAATGTCAACCCACCTACACAATTCTTCCAGAAGTTAATACCATTTCAATGTATTCTAATTGGAAGATTTGTTCTGAAATGGGAAGTAATATGTTGGGTGTTCGAGGTATGGATTTATATGACTCAAGCCAACGTAGCCACAAATATACACGAGCCAGTCAGTCTCATGATTATATAGTTGCTCATTCTTCTTACAAGCATCAAAAAGTGACTGATCAAACAAATAAAGTTGAAATTAACACTGTGGGTAAGTTAAAGATTTGTCCTGGAGGTTTTGAATCCAATGAAGATTATGTATACGTAAGAGGTCGAGGAAGAGGGCGATATGTATGTGCTGATTGTGGTATACGTTGTAAAAAGCCTTCAATGCTCAAGAAACATATCAGAACCCATACTGACTTAAGACCATACACCTGTACACAATGTACCTTCAGTTTTAAAACTAAAGGAAATTTGACCAAACATATGAAGTCCAAAGCACATTTCAAAAAAGGAGTTGAACAGGATCAAAGTACAACACCTGTTGATGATGTTAAGCAATTTGATTCTGAAGACATGGAAGATTACTCAGAAGATAATATGGATGAAGACGATGATATTGATGATGAAGATGATGACGAGGAAACAATAGATAGACTTGGGTGGCGTAAAACTCAATCAGATTTTGATGCTGCACGATCACTTTTAAGACTATCACAAGTCTGCCCATCTCAAATACCACAATCAAATCATGCAAAAGCAGGAATATTGCCCTATGATCACCGACCAGTATCATATCCATATCAATCTCCTTTATCAATCACAGAGTCTGAAGTTCAAAATAATCATTCTACCCAAACACAAATTAGTTTACCTTTGCAATCTGGGAGCCGTCTTGAAGTATCACCTGTTCCATCCACAACTGTTTTTAATAATCCATCTGTTAATAATCCAGAAATCGTTCAAACTACACCATCAGATTTGAGGCATAATGTTAATGCAATATTAAACAGTAGTCCAAAACCTTTGGCTCATAAACCAATGGATCTTTCACGTTTCGGAGGCAGCAAAGAAACAGAACAAATAAATAAATCTCAAGTAGCTCTGCAATCTTCAAAAAAACCTAAAGCACTATTTCGGCAACCTACAACGAATGGTCCATCACAAAAATATACTAGTATTCTAGAAGATGGACGTAGTAAATGTATGGTGTGTGATAAGGTATTCAATAAACCTAGTCAATTACAATTACACATCAATATACATTATTTTGAACAACCATTCCGATGCGAAAGCTGCAAAGAATCATTCCGAACCAAACATTTGCTTCAAAAACATTTGGACTCTAGCACGCATTTGAATAAGGTGAATATGATGTCCACCCAAGGGCCCATTGTTAAAAACCCAAGGCCATTTGAGTGTGCTGATTGCCAAGTTGGTTTTCGAATTCACGGACATCTAGCCAAACACTTACGATCTAAAATGCATATACTTAAATTGGAGTGTTTAGGGAAGATACCTTTTGGAACATATGCTGAAATTGAACGTTTAGGGTTGAATTTAAATGATATTGATACCACAGACTGTGACAGTGCATTGAAAAGTTTACAAGCAAGCCAAAAAGCCATATAA
Protein Sequence
MSERVWKEVWIDVRFAYVVDDAIEMSPSHNENKSIMCLSDKSSPSAPLSAGNYLHKKFKKVATAEDCPEVAAVPTPVLSTDEYSVEGVWRHKCPYCKTVCTKPSALIKHLQFHSDERPFPCETCGLSFKSKSNLTNHCKSQSHTERLAIEEPEEVKPKIYKPKFRTALIYTKFEEDSSKDPEPVTETVPILSYKHEEDSSQPLNLSVASIKRCQDKISPIEENGQTELKGVYKLLLNQIIKCNGNDNKEQPFCETCGLKFNCKEDLMRHICDISPNEIKYTESKTVAMPLPSPGPLLGRTPLVEFHRTKEPDVPKPLIVRTGINLVQQQQEMIAIFQGSRAIPYVPGMPGPHTAMPHQLRPQYEPKQTESPPSKRQKVEEEFLVSTSHHQILTTTVTTSTAAQKFVRPTSLAFKPGTFSTNRMLPVVSPDTPRPKKSYQQLYLNGHAYTYLGLKCSTRVFYCTLTKCQPTYTILPEVNTISMYSNWKICSEMGSNMLGVRGMDLYDSSQRSHKYTRASQSHDYIVAHSSYKHQKVTDQTNKVEINTVGKLKICPGGFESNEDYVYVRGRGRGRYVCADCGIRCKKPSMLKKHIRTHTDLRPYTCTQCTFSFKTKGNLTKHMKSKAHFKKGVEQDQSTTPVDDVKQFDSEDMEDYSEDNMDEDDDIDDEDDDEETIDRLGWRKTQSDFDAARSLLRLSQVCPSQIPQSNHAKAGILPYDHRPVSYPYQSPLSITESEVQNNHSTQTQISLPLQSGSRLEVSPVPSTTVFNNPSVNNPEIVQTTPSDLRHNVNAILNSSPKPLAHKPMDLSRFGGSKETEQINKSQVALQSSKKPKALFRQPTTNGPSQKYTSILEDGRSKCMVCDKVFNKPSQLQLHINIHYFEQPFRCESCKESFRTKHLLQKHLDSSTHLNKVNMMSTQGPIVKNPRPFECADCQVGFRIHGHLAKHLRSKMHILKLECLGKIPFGTYAEIERLGLNLNDIDTTDCDSALKSLQASQKAI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01499835;
90% Identity
-
80% Identity
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