Sgrm024900.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Schizaphis graminum
Gene Symbol
Hivep1
Assembly
GCA_003264975.1
Location
QEWZ01001414.1:358745-378962[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 8 2.5e-05 0.0024 18.7 2.5 1 23 92 114 92 114 0.98
2 8 0.00037 0.036 15.0 3.9 1 19 120 138 120 144 0.92
3 8 0.00061 0.06 14.4 0.5 3 21 255 273 254 274 0.95
4 8 1.3e-06 0.00013 22.7 1.3 1 23 574 596 574 596 0.99
5 8 3.1e-06 0.0003 21.6 3.1 1 23 602 626 602 626 0.92
6 8 3.6e-06 0.00035 21.4 0.3 2 23 855 876 854 876 0.97
7 8 1.9e-05 0.0018 19.1 2.1 1 22 882 903 882 906 0.91
8 8 0.0053 0.51 11.4 1.4 1 23 926 950 926 950 0.92

Sequence Information

Coding Sequence
ATGTCTTTGGCATGTAAAACTATGCTACGAAAAAGATTTCCAGGGGAAGTCCCTGTTAAATTGGACGATACGATCAAGATGAGTCCCAGCAACAACGAGAACAAAAacgtAATGTGTCACTCTGACAAATCTTCGCCATCGGCCCCCTTATCGGGTGGAAActacttacataaaaaattcaaaaaaattgccACGGCAGACGATTATCCTGAAGTTGCTATTCCTGCGCCTGTGATGTCCACTGATGAATATTCTCTTGAAGGTGTATGGCGACATAAATGTCCATATTGTAAAACTGTATGCACTAAGCCAAGTGCGCTTGCTAAACATTTACAAGTGCACTCCGATGAACGTCCTTTTCCATGCGAAACGTGCGGATTTGCTTTTAAAACAAAGAGCAACCTATCAAAACACTGTAAATCCCAATCCCATACAGAACGGCTAGCAAAAGAAGAACCAGAAGAggtaaaaccaaaaatatacaaaccaaAATTTCGTACAGCCTCAATACACACAAAACCGGAAGAATTAAATACACCAGAAGACTATTCCGAACCGGTTTCTGAAATGGTTCAAGTATTACCAAATAAACAAGATGAAGATTCTTCTCAACCTTTGAATTTGTCTGTGGTAGATGCAGTTAAAAAATGTCAGCAAAAAATGTCTCCTGTTGCAGTAAATGGTCAAACTGAGCTAAAAGGTGTTTATAAGTTGCTGTTGaaccaaataattaaatgtaatgagAATAAGGAACAGCCTTTTTGTGAAATGTGtggcttaaaatttaatagtcaAGAAGACTTGGTCAGACATATTTGTGATCGAAGTCCAAATGGAGTTAAATATCCAGAGTCCAAGACTGTAGCCATGCCACTCCCATCACCAGGACCATTGTTAGGGCGCACACCTTTAGTTGAGTTTCACAGACCAAAGGAACCTGATGTACAAAAACCAGTTGTTTTGCGTGTCGGTAACTTGATACAACAACAGGAAATGATTGCCATCTTTCAAAGTAGTCGTGCTGTACCATTTGTGCCAGGTATTCCAGGACCACATACGGCAATACCTCATCAACTCCGACCTCAGTATGCACTGAAGCAGACTGATCCTCCACCTCCGAAGAAACCAAAAGTAGATGACAAATTTATTGTTTCAACATCTCATCATCAGattacaaCAACTACTACAACTACTAGTACAGTGGCCCAGAAATTTGTACGACCAACGTCATTAGCATTCAAACCAGGAACATTTAGTACTAATCGTATGCTGCCCATGGTTAGTCCAGATACTCCAAGACCAAAAAAGAGCTACCAACAATTATATCTTAATGGCCATGCATATACTTATTTGGGTTTAAAGTGTACGACAAGAGTGTTTTTTTGTACGCTGACCAAATGTCAACCCACATATACAATTCTTCCGGAAGTTAACACTATATCAATGTACTCAAATTGgaagATTTGTTCCGATATGGGAAGTAATGTGCTGGGTGTTAGAGGTATGGATTTATATGACTCAAGTCAGCGTAACCACAGATATATACAAGCTGGCCAATCTCATGATTACATAGTTGCCCATTCATCTTATAAGCATCAAAAATTGCCTGATAAAACCAGTAAAGTTGAAACTAACTCTTTGGGAAAATTAAAGATCTGCCCTGGAGGGTTTGAATCTAACGAAGATTATGTATATGTTAGAGGTAGGGGAAGGGGGCGATATGTATGTGCTGATTGTGGAATTCGCTGTAAAAAGCCTTCAATGCTCAAGAAACATATCAGAACCCATACTGACTTAAGGCCATATACTTGTACGCAATGTACTTTCAGttttaaaactaaaGGCAATTTGACGAAACATATGAAGTCAAAAGCACATTTCAAAAAAGGAGTCGAACAGGATCAAAATCCAATGACCATGGATGATATTAAGCAACTTGATTCTGAAGATATGGAAGACTACTCTGAAGATAATATGGACGAAGACGATGATATTGATGATGAAGATGACGAAGAGGAAGCAGTAGATAGACATGGGTGGCGAAAAACTCAATCTGATTTTGATGCTGCACGTTCATTATTAAGACTTTCACAAGTCTGTCCATCACAAATACCTCAGTCAAATCACGCAAAAGCTGGTATATTGCCTTATGATCACCGGCCTGTATCATATCCATATCAATCTCCTTTAACACTGACTGAGTCTGagctaaaaaataatcatcagTATCAGAAACAAATTAGTCCACCTTTACAATCTGGAAGCAGTCTCTTAGCATCACCATCACCTGTTCCACCTACAACTGTTTTTAATAACCCAGAGGTGATTCAAAAAACACCTGCAGATTTGAGGCATAATGTAAATGCGATTCTTAGTAGTCCAAAAGCCACGGTTAATAAACCAATAGATCTTTCACGTTTTGGAGGCAGTAATGAATcagaacaaataaataaaccacaAGTCATATTGCAGTCCCCCAAAAAACCTAAAGCATTGTTTCGACAACCTACAACAAATGGTCCATCACAAAAATATACCAGTATTCTAGAAGATGGGCGGAGTAAGTGTATGGTGTGTGATAAGGTATTCAATAAACCTAGTCAATTACAATTgcacattaatatacattattttgaacAACCATTCCGATGTGAAGGCTGTAAAGAATCATTCCGAACTAAACATTTGCTTCAAAAACATTTGGACTCTATCTCACATTTGAATAAAGTGAATATGATGTCCACCCAAGGGCCCATCGTTAAAAATCCAAGACCATTTGAATGTGCTGATTGCCAAGTTGGTTTTCGAATTCATGGACATTTAGCTAAACATTTACGATCTAAAATGCATATACTTAAATTGGAATGTTTGGGGAAAATACCATTTGGAACATATGCTGAAATTGAACGCTTAGGGttgaatttaaatgatattgatACTACTGACTGTGACAGTGCGTTAAAGAGTTTACAAGCCAGCCAAAAAGccacataa
Protein Sequence
MSLACKTMLRKRFPGEVPVKLDDTIKMSPSNNENKNVMCHSDKSSPSAPLSGGNYLHKKFKKIATADDYPEVAIPAPVMSTDEYSLEGVWRHKCPYCKTVCTKPSALAKHLQVHSDERPFPCETCGFAFKTKSNLSKHCKSQSHTERLAKEEPEEVKPKIYKPKFRTASIHTKPEELNTPEDYSEPVSEMVQVLPNKQDEDSSQPLNLSVVDAVKKCQQKMSPVAVNGQTELKGVYKLLLNQIIKCNENKEQPFCEMCGLKFNSQEDLVRHICDRSPNGVKYPESKTVAMPLPSPGPLLGRTPLVEFHRPKEPDVQKPVVLRVGNLIQQQEMIAIFQSSRAVPFVPGIPGPHTAIPHQLRPQYALKQTDPPPPKKPKVDDKFIVSTSHHQITTTTTTTSTVAQKFVRPTSLAFKPGTFSTNRMLPMVSPDTPRPKKSYQQLYLNGHAYTYLGLKCTTRVFFCTLTKCQPTYTILPEVNTISMYSNWKICSDMGSNVLGVRGMDLYDSSQRNHRYIQAGQSHDYIVAHSSYKHQKLPDKTSKVETNSLGKLKICPGGFESNEDYVYVRGRGRGRYVCADCGIRCKKPSMLKKHIRTHTDLRPYTCTQCTFSFKTKGNLTKHMKSKAHFKKGVEQDQNPMTMDDIKQLDSEDMEDYSEDNMDEDDDIDDEDDEEEAVDRHGWRKTQSDFDAARSLLRLSQVCPSQIPQSNHAKAGILPYDHRPVSYPYQSPLTLTESELKNNHQYQKQISPPLQSGSSLLASPSPVPPTTVFNNPEVIQKTPADLRHNVNAILSSPKATVNKPIDLSRFGGSNESEQINKPQVILQSPKKPKALFRQPTTNGPSQKYTSILEDGRSKCMVCDKVFNKPSQLQLHINIHYFEQPFRCEGCKESFRTKHLLQKHLDSISHLNKVNMMSTQGPIVKNPRPFECADCQVGFRIHGHLAKHLRSKMHILKLECLGKIPFGTYAEIERLGLNLNDIDTTDCDSALKSLQASQKAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01499835;
90% Identity
iTF_01033236;
80% Identity
-