Rpad020387.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhopalosiphum padi
Gene Symbol
Hivep1
Assembly
None
Location
scf7180000008288.324929:126217-144004[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 8 1.9e-05 0.0023 18.8 2.5 1 23 92 114 92 114 0.98
2 8 0.00027 0.035 15.1 3.9 1 19 120 138 120 144 0.92
3 8 0.00045 0.057 14.4 0.5 3 21 255 273 254 274 0.95
4 8 9.9e-07 0.00012 22.8 1.3 1 23 551 573 551 573 0.99
5 8 2.3e-06 0.00029 21.7 3.1 1 23 579 603 579 603 0.92
6 8 2.6e-06 0.00033 21.5 0.3 2 23 831 852 830 852 0.97
7 8 1.4e-05 0.0017 19.2 2.1 1 22 858 879 858 882 0.91
8 8 0.0039 0.49 11.5 1.4 1 23 902 926 902 926 0.92

Sequence Information

Coding Sequence
ATGTCTTTGGCATGTAAAACTATGCTGCGAAAAAGATTTCCAGGGGAAGTCCCTGTTAAATTGGACGATACGATCAAGATGAGTCCCAGCAACAACGAGAACAAAAACGTAATGTGTCACTCTGACAAATCTTCGCCTTCGGCCCCCTTATCGGGTGGAAACTACTTACATAAGAAATTCAAAAAAATTGCCACGGCGGACGATTATCCTGAAGTTGCTATTCCTGCGCCTGTGATGTCTACTGATGAATATTCTCTTGAAGGTGTATGGCGACATAAATGTCCATATTGTAAAACTGTATGCACTAAGCCAAGTGCGCTTGCTAAACATTTACAAGTGCACTCCGATGAACGTCCTTTTCCATGCGAAACGTGCGGATTTGCTTTTAAAACAAAGAGCAACCTATCGAAACACTGTAAATCCCAATCCCATACAGAACGGCTAGCAAAAGAAGAACCAGAAGAGGTAAAACCAAAAATATACAAACCAAAATTTCGTACGGCCTCAATACACACAAAATCGGAAGAATTTAATACACCAGAAGACTATTCCGAACCGGTTTCTGAAATGGTTCAAGTATTACCAAATAAACAAGAAGAAGATTCTTCTCAACCTTTGAATTTGTCTGTGGTAGATGCAGTTAAAAAATGTCAGCAAAAAATGTCTCCTGTTGCAGTAAATGGTCAAACCGAGCTAAAAGGTGTATATAAGTTGCTGTTGAACCAAATAATTAAATGTAATGAGAACAAAGAACAGCCTTTTTGTGAAATGTGTGGCTTAAAATTTAATAGTCAAGAAGACTTGGTCAGACATATTTGTGATCGAAGTCCAAATGGAGTTAAATATCCAGAGTCTAAGACTGTAGCCATGCCACTCCCATCACCAGGACCATTGTTAGGGCGTACACCGTTAGTTGAGTTTCACAGACCAAAGGAACCTGATGTACAAAAACCAGTCGTTTTGCGCGTCGGTATTCCAGGACCACATACGGCAATACCTCATCAACTCCGACCTCAGTATGAACTGAAACAGACTGATCCTCCACCTCCGAAAAAACCAAAAGTAGATGACAAATTTATTGTTTCAACATCTCATCATCAGATTACAACAACTACTACAACTACTAGTACAGTGGCCCAGAAATTTGTACGACCAACGTCATTAGCATTCAAACCAGGAACATTCAGTACTAACCGTATGCTGCCCATGGTTAGTCCTGATACTCCAAGACCAAAAAAGAGCTACCAACAATTATATCTTAATGGCCATGCATACACTTATTTGGGTTTAAAGTGTACAACAAGAGTGTTTTTTTGTACGCTGACCAAATGTCAACCCACATATACAATTCTTCCAGAAGTTAATACTATATCAATGTACTCAAATTGGAAGATTTGTTCCGATATGGGAAGTAATGTGCTGGGTGTTAGAGGTATGGATTTATATGACTCAAGTCAGCGTAACCACAGATATATACAAGCTGGTCAATCTCATGATTACATAGTTGCTCATTCATCTTACAAGCATCAAAAATTGCCTGATCAAACCAGTAAAGTTGAAACTAATTCTTTGGGCAAATTAAAGATCTGCCCTGGAGGGTTTGAATCCAATGAAGATTATGTATATGTTAGAGGCAGGGGAAGGGGGCGATATGTATGTGCTGATTGTGGAATTCGCTGTAAAAAGCCTTCAATGCTCAAGAAACATATCAGAACCCATACTGACTTAAGGCCATATACTTGTACGCAATGTACTTTCAGTTTTAAAACTAAAGGTAACTTGACGAAACATATGAAGTCAAAAGCACATTTCAAAAAAGGAGTTGAACAGGATCAAAATCCAATGTCCATGGATGATATTAAACAACTTGATTCTGAAGATATGGAAGACTACTCTGAAGATAATATGGACGAAGACGATGATATCGATGATGAAGATGATGAAGAGGAAGCGGTAGATAGACATGGGTGGCGTAAAACTCAATCTGATTTTGATGCTGCACGTTCATTATTAAGACTTTCACAAGTCTGCCCATCACAAATACCTCAGTCAAATCACGCGAAAGCTGGTATATTGCCTTATGATCACCGGCCTGTATCATATCCATATCAATCTCCTTTAACACTGACTGAGTCTGAGCTAAAAACTAATCATCAGTATCAGAAACAAATTAGTCCACCTTTACAATCTGGAAGCAGTCTCTTAGTATCACCATCACCTGTTCCACCTACAACTGTTTTTAATAACCCAGAGGTGATTCAAAAAACAGCAGATTTGAGGCATAACGTAAATGCGATTCTTAGTAGTCCAAAAGCCACGGTTAATAAACCAATGGATCTTTCACGTTTTGGAGGCAGTAATGAATCAGAACAAATAAATAAACCACAAGTAATATTGCAGTCTCCCAAAAAACCTAAAGCATTGTTTCGACAACCTACAACAAATGGTCCATCACAAAAATATACCAGTATTCTAGAAGATGGGCGGAGTAAGTGTATGGTGTGTGATAAGGTATTCAATAAACCTAGTCAATTACAATTGCACATTAATATACATTATTTCGAACAACCATTCCGATGTGAAGGCTGTAAAGAATCATTCCGAACTAAACATTTGCTTCAAAAACATTTGGACTCTATCTCACATTTGAATAAGGTGAATATGATGTCCACCCAAGGGCCCATTGTTAAAAATCCAAGACCATTTGAATGTGCTGATTGCCAAGTTGGTTTTCGAATTCATGGACATTTAGCTAAACATTTACGGTCTAAAATGCATATACTTAAATTGGAATTTTACAAGCCAGCCAAAAAGCCACATAATAATATAATCAATCAGAGTCAATGTTAA
Protein Sequence
MSLACKTMLRKRFPGEVPVKLDDTIKMSPSNNENKNVMCHSDKSSPSAPLSGGNYLHKKFKKIATADDYPEVAIPAPVMSTDEYSLEGVWRHKCPYCKTVCTKPSALAKHLQVHSDERPFPCETCGFAFKTKSNLSKHCKSQSHTERLAKEEPEEVKPKIYKPKFRTASIHTKSEEFNTPEDYSEPVSEMVQVLPNKQEEDSSQPLNLSVVDAVKKCQQKMSPVAVNGQTELKGVYKLLLNQIIKCNENKEQPFCEMCGLKFNSQEDLVRHICDRSPNGVKYPESKTVAMPLPSPGPLLGRTPLVEFHRPKEPDVQKPVVLRVGIPGPHTAIPHQLRPQYELKQTDPPPPKKPKVDDKFIVSTSHHQITTTTTTTSTVAQKFVRPTSLAFKPGTFSTNRMLPMVSPDTPRPKKSYQQLYLNGHAYTYLGLKCTTRVFFCTLTKCQPTYTILPEVNTISMYSNWKICSDMGSNVLGVRGMDLYDSSQRNHRYIQAGQSHDYIVAHSSYKHQKLPDQTSKVETNSLGKLKICPGGFESNEDYVYVRGRGRGRYVCADCGIRCKKPSMLKKHIRTHTDLRPYTCTQCTFSFKTKGNLTKHMKSKAHFKKGVEQDQNPMSMDDIKQLDSEDMEDYSEDNMDEDDDIDDEDDEEEAVDRHGWRKTQSDFDAARSLLRLSQVCPSQIPQSNHAKAGILPYDHRPVSYPYQSPLTLTESELKTNHQYQKQISPPLQSGSSLLVSPSPVPPTTVFNNPEVIQKTADLRHNVNAILSSPKATVNKPMDLSRFGGSNESEQINKPQVILQSPKKPKALFRQPTTNGPSQKYTSILEDGRSKCMVCDKVFNKPSQLQLHINIHYFEQPFRCEGCKESFRTKHLLQKHLDSISHLNKVNMMSTQGPIVKNPRPFECADCQVGFRIHGHLAKHLRSKMHILKLEFYKPAKKPHNNIINQSQC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01499835;
90% Identity
iTF_01033236;
80% Identity
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