Tdic018504.1
Basic Information
- Insect
- Trypoxylus dichotomus
- Gene Symbol
- lrrfip2
- Assembly
- GCA_014905495.1
- Location
- BNES01000095.1:555082-571891[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.012 3e+02 1.0 1.5 228 269 49 90 10 113 0.69 2 3 2.2e-110 5.6e-106 354.7 31.8 1 300 167 460 167 460 0.94 3 3 0.00039 9.8 5.8 2.9 120 173 458 511 458 513 0.94
Sequence Information
- Coding Sequence
- ATGGAACGTAGCGATAGTGTAGATTCTTTGGAGGATCTTTTAAACGATCTAAACGATGATAGTGACGAAAGTTTTACGGAAAAAGTGGCAAGTGAAAAAAAAGCGAAGGAAAAATCAGATGGCGATGGTATTAAAGGAAAGGGTAAAACTGatactaaagaaaaatgtgatgCAGAAGTAAAGGAACTGAAGAATAATTTACCAAATCAAAATAGTGTGAAAGATGAAACCAAAATTGAAAGCCAAGAAACAAAACTGGACTTCGAAAATACCTCAACTCCTTCGGAAGCAACAGAGTGCATCAATCCAAATGTGAGCTGTGATATTTCCGACGTTAGGCAAGGAGTTAAAATCCTCCTGGAAGGTGTGACTGAAACTGAATCGAGTGACTATGGTGGAGTTAGTAAGGACCAACTTAAATCCAGCAGGAGTCATAGTCTTTCCTCGCATCTTGAAGAGGACGTCATCAATCAATTTTTGGATAAAACCACCGAAgacgcCGAGGCTCGTATGCTAGCGAAGAGACAAGCACGTGCCGAAGCTAGGGAAATTCGTATGCGAGAATTGGAACGACAGCAAAAGGAACAGGAAGAAAATGCCGACAGACAGTTCGATATGCTATCGGAGCCCATAGCTAGGCCGACCCGTGCCACTGGTTCGAGATACCTCTCCAGTAGGAGGAGTTCCGAGGATTCCTTGGAGGATGGCGGTAGTCTTAGAGAATTACGACATGAACTCAAGGAAGTCGAGGAGAAGTTCCGCAAGGCGATGGTGGCCAATGCTCAGCTCGATAACGATAAGGCGGCGCAAACATATCAATTGGAGCTACTTAAAGATAGgTTAGAGGAATTAGAAGAAGAACATTCGCAATTGAAGCGTGAACATAGGGATAAGTGCAGGGAGCACGACCAGCTGAAGCGGCTGGCGACGCGTCTGAAGGAGGAATTGGCTGTGACGAAGGCTGAATTGGAGGAGAGGGATAGGTTAATAGCGGAAAAGGGTCTAGTGATCGTTGGCGATGATTCGTTATGCGAAGAACCGTCATCGGATGGGGCTGTGAACGGTTTAGGAACGCCTAAGAAGGCTTTGGTTAGCGTCGAGAACGCGCAATTATTGGATACGATTGGTGAAGGTAGTTTAGATGTTCGGCTGGCGAAATTCGCGAAAGAGAAAGGCGAACTTCAAGATCAAATTAGTCATTTGAAATTGGAACTGGAGGAAGAACGAAGCAAGCGGCGGAAATCCAATGCGTCTGGTATCACTTCAAATGGCCCGACGTCCGACGCTGACTACGATGCTGCAGATATACAAAGAGAAGTCAGCAAACAGTTAGCGGAATACAAATTTCGCTCGCAAAAAGCTGAACAGGATGTGGCCACGCTACAGGCAACGGTGGCGAGATTAGAGAGTCAAGTGATAAGATATAAATCGGCCGCGGAAGTTTCAGAAAAATCGGAGGAGGCGTTGAAAGCGGAGAAGCGAAAATTGCAAAGAGAGGTGAATATTCTGCAGCAGCAATTGTTGCGGATGGATGCCTATAAAGTAGCCTTGTCTGAACAGTGCAAACGTTTGCAGAGAAAGCTGTCCCTAGGTCTCCCATAG
- Protein Sequence
- MERSDSVDSLEDLLNDLNDDSDESFTEKVASEKKAKEKSDGDGIKGKGKTDTKEKCDAEVKELKNNLPNQNSVKDETKIESQETKLDFENTSTPSEATECINPNVSCDISDVRQGVKILLEGVTETESSDYGGVSKDQLKSSRSHSLSSHLEEDVINQFLDKTTEDAEARMLAKRQARAEAREIRMRELERQQKEQEENADRQFDMLSEPIARPTRATGSRYLSSRRSSEDSLEDGGSLRELRHELKEVEEKFRKAMVANAQLDNDKAAQTYQLELLKDRLEELEEEHSQLKREHRDKCREHDQLKRLATRLKEELAVTKAELEERDRLIAEKGLVIVGDDSLCEEPSSDGAVNGLGTPKKALVSVENAQLLDTIGEGSLDVRLAKFAKEKGELQDQISHLKLELEEERSKRRKSNASGITSNGPTSDADYDAADIQREVSKQLAEYKFRSQKAEQDVATLQATVARLESQVIRYKSAAEVSEKSEEALKAEKRKLQREVNILQQQLLRMDAYKVALSEQCKRLQRKLSLGLP*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00627210; iTF_01120874;
- 90% Identity
- -
- 80% Identity
- -