Obor010148.1
Basic Information
- Insect
- Oryctes borbonicus
- Gene Symbol
- lrrfip2
- Assembly
- GCA_902654985.1
- Location
- LR736909.1:76639-83389[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.12 2.3e+03 -2.4 4.4 29 91 16 80 7 87 0.53 2 3 2.9e-109 5.2e-105 351.0 31.4 1 300 156 451 156 451 0.93 3 3 0.024 4.3e+02 -0.0 5.0 120 167 449 496 448 521 0.78
Sequence Information
- Coding Sequence
- ATGGAGCGTAGCGACAGTGTGGACTCTTTGGAGGATCTATTAAATGATCTAAACGATGATAGTGATGAAAGTTTTACGGAAAAAGTGACTAGTGAAAAGAAAGTGAAGTCTACCGGGACTAAGGAACTAATTATTCCAAAAGAATTTGTCGTAGAGCAAAAGGATGCGAAGCGAGATAGTGAACAGGATGACGCCAAAATTCGGGAAAGTCACGAATCAAGCCAGGACTTTGAGAAGGCTTCAACTCCTTCGGAATCGGCGCAGTGTGTCAATCCGGACGTGAGCTGTGATATTTCTGATGTTCGGCAAGGAGTAAAGATCCTGCTGGAAGGTGTGACTGAAAGTGAATCGAACGATTACACTACACCCGGCAAGGATCCGCTTAAATCGAGCCGGAGTCATAGCCTTTGCTCGCACCTCGAAGAGGATGTCATCAATCAGTTTTTGGATAAAACCACCGAAGATGCCGAGGCGCGCATGCTAGCTAAGAGACAAGCACGCGCCGAAGCTAGGGAAATTCGTATGCGAGAATTGGAACGACAACAGAAGGAGCAGGAGGAAAATGCCGACAGACAGTTCGATATGCTATCGGAACCAATCGGCAGGCCGACCCGAGCTACCGGTTCCAGATATCTCTCTAGCAGGAGGAGTTCCGAAGACTCCCTCGAGGATAGCGGTAGTCTTCGAGAATTACGACATGAACTCAAAGAGGTCGAGGAGAAATTCCGGAAGGCTATGGTGGCCAATGCCCAGCTCGACAACGATAAGGCGGCACAGACATATCAATTGGAGCTACTTAAAGATAGgttAGAGGAATTAGAAGAAGAACATTCACAATTGAAACGCGAACATAGAGACAAGTGCAGAGAGCACGACCAGCTAAAGCGGCTGTCGGCTCGTCTAAAGGAGGAATTGGCTGTGACGAAGGATGAACTGGAGGAACGGGATAGGTTGATAGCGGAAAAGGGGCTAGTGATCGTCGGCGATGATTCGTTGTGCGAGGAGCCGTCGTCGGATGGGGCTGTGAACGGTTTGGGGACGCCAAAAAAGGCCTTGGTTAGCGTCGAAAACGCGCAATTATTGGATGCGGTCGGTGAGGGTAGTTTAGATGTTCGGCTGGCGAAATTCGCGAAAGAGAAGAGCGAACTTCAAGATCAAATTAGTCATTTGAAATTGGAACTGGAGGAAGAACGAAGCAAACGACGGAAATCCAATGTTTCTGGTGGTGGTATCACTTCCAATGGGCCGACGTCCGACGCCGACTACGATGCTGCAGATATACAAAGGGAAGTCAGCAAACAGTTGGCGGAATACAAGTTTCGCTCGCAGAAAGCTGAACAGGATGTGGCCACGTTACAGGCGATGGTTGCGAGATTAGAAAGTCAAGTGATTAGGTATAAATCGGCCGCCGAGGTTTCGGAAAAATCCGAGGAAGCTCTAAAAGCGGAGAAACGAAAATTACAAAGAGAGGCACGGGAAGCAATGAATAGGGCCGAAGAGCTGGAAACATCAAATACACACTTACTTAAGCGACTAGACAAATTGAAAAACGCAAAATCGACTTTGTTAAAGGAACTTTGA
- Protein Sequence
- MERSDSVDSLEDLLNDLNDDSDESFTEKVTSEKKVKSTGTKELIIPKEFVVEQKDAKRDSEQDDAKIRESHESSQDFEKASTPSESAQCVNPDVSCDISDVRQGVKILLEGVTESESNDYTTPGKDPLKSSRSHSLCSHLEEDVINQFLDKTTEDAEARMLAKRQARAEAREIRMRELERQQKEQEENADRQFDMLSEPIGRPTRATGSRYLSSRRSSEDSLEDSGSLRELRHELKEVEEKFRKAMVANAQLDNDKAAQTYQLELLKDRLEELEEEHSQLKREHRDKCREHDQLKRLSARLKEELAVTKDELEERDRLIAEKGLVIVGDDSLCEEPSSDGAVNGLGTPKKALVSVENAQLLDAVGEGSLDVRLAKFAKEKSELQDQISHLKLELEEERSKRRKSNVSGGGITSNGPTSDADYDAADIQREVSKQLAEYKFRSQKAEQDVATLQAMVARLESQVIRYKSAAEVSEKSEEALKAEKRKLQREAREAMNRAEELETSNTHLLKRLDKLKNAKSTLLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01498886;
- 90% Identity
- iTF_00627210;
- 80% Identity
- -