Trha006960.1
Basic Information
- Insect
- Troides rhadamantus
- Gene Symbol
- -
- Assembly
- GCA_018246435.1
- Location
- DWLU01000993.1:7590-10606[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.16 42 7.0 0.5 2 19 9 26 8 29 0.93 2 17 0.00027 0.07 15.7 4.1 3 23 115 135 113 135 0.97 3 17 0.01 2.6 10.7 0.1 2 23 163 185 162 186 0.94 4 17 0.42 1.1e+02 5.7 0.5 1 23 205 228 205 228 0.92 5 17 0.00049 0.13 14.9 5.3 1 23 233 256 233 256 0.97 6 17 6.4e-05 0.016 17.7 2.9 1 23 261 284 261 284 0.95 7 17 0.0065 1.7 11.4 2.1 2 20 287 305 287 309 0.94 8 17 0.0028 0.71 12.5 1.6 2 22 316 336 316 336 0.95 9 17 0.42 1.1e+02 5.7 5.2 1 23 392 415 392 415 0.95 10 17 0.54 1.4e+02 5.3 0.1 2 23 443 465 442 465 0.92 11 17 1.8 4.7e+02 3.6 0.1 3 23 489 511 487 511 0.92 12 17 5.9e-05 0.015 17.8 0.6 3 23 518 539 517 539 0.94 13 17 0.0069 1.8 11.3 4.5 2 23 544 566 543 566 0.93 14 17 0.0017 0.43 13.2 2.5 1 23 571 594 571 594 0.97 15 17 2.8e-05 0.0073 18.8 5.5 1 23 598 621 598 621 0.98 16 17 0.0005 0.13 14.9 0.3 2 23 628 649 627 649 0.96 17 17 5.2e-05 0.013 18.0 1.1 1 23 655 677 655 677 0.97
Sequence Information
- Coding Sequence
- ATGGATCATGACTTAGGCGGACTGCAATGCGGTTACTGTTTTAAAGTTATGACGACGAAGCAGAGTTTTCTTCGGCACGCGTCCTTTTGCACACAACATATCGATTGCATTAAAACTAACGGTTTAGTAGAAGCAGACGAAAGAAAACCTTCAGTGAAAAGGATTAGAAGTGATTTGGCTTGCCTCCTCAACATGTCCACGGCTATCCCATTTAAACACTATCTCAATGAAACAAAGCAAGCCACGTGCGAGACCTTTACCTCCGAGAAGAGGAGGAGAAACTTGCAAATTCTATTCAACAACACAACAATTTTGCCATTCAAATGGCGTGGGAGATGTCTCTGTTTCTATTGCGGAAAGAGCTATGCACAGTATAACGACTTTAGAAAACACACGCGATCCCACAGTCCGTGCACAACAAAAGATTACGCATTGAAAGTGATTAAAGGAAATCACATCGAGATAAAAATCGATGTGTCAGAGATCTCGTGCGAGATCTGCAACGAACCATTCGCCACATTCGATGaaataataagtcatttaaTCGTGAAACACCACTTGGAATACGATAAATCTGTAAACACGCCGTTCCAAGAATACAGACTGGTGGATTTCCGTTGTATTTTTTGCGAAGAGCAATTTACTTACTTCGGATATTTGGTCAATCACGTAAATAATGTACACCCTCAAAACAGTTACCACTGCAAAGATTGCGGCACGTTCTTTAATAAAAAGAGAGATCTAGCATTGCACTTACGGCATAACCATCGCGAAGGTGGATACCCTTGCTCCGAGTGTTCTCAAACTTTCAAATCTCACAGTTTACTGCGTAGCCATCAGAACGATTTTCACTTCAGAAAATGTAAATGGTGCGGACTAAACTTTGCTTCCTATAGTCTCCTATTAAAGCACACGCAATGCGACCACCCGGACGACGGCAGCGCCAAATGCCCGCATTGTTCCAAACAGTTAAACTCTTCGCAAGGTTTAAAGCAGCATATGAACAAATGTAAGGTTAACATGCTAGTTAAAATAGAACATCCTGTCGATGACAACTTCTCCGAAGACAATTTGCTGCAACCGAAGAAGAAACAGAATATACTGCAAATACGTCAGAATATCCAAAGTGTTCTCAACATGTCAACTGCGATGCCTTTCAAGTTTTTCGCGAAATTTTGTTGCTTCTATTGCTCTAAGAAGTGCGTCGAATTTGACGAGCTCAAGGAGCACACTATTTCAGACCATCCGGTATGCGATTTGAATTCGAAAAGCATGAAGAAATGCAAAGGCGAAAGGATAACGGTAAAAGTCGACATAACGGATTTGAGATGTAAACTTTGCGGTCGACAAATGGAAACTTTGGACGTATTGATAGATCATCTTATATCCAAACATGAAGCGGCCTATGATAAATCTGTAACTGGATGTCTAGAACCATACAAAATGGTGAAAGACAATATAGCGTGCCCATTTTGCCCAAATCGCGTGTTTAGATATTTTGGCATTCTATTGAGGCACataaactccgagcatagtaataataacagaatttgCGATTTCTGTGGTCGCAGTTTTAAGAGCGTGACTAATTTGAAGGTCCACATCACGTACACGCACACAGGTGCGTGCGAGTGTGACGTGTGCGGAACTAAATACAAGAACCAGTGGTGCCTGAGCCGGCACAAAGCGAAGAGCCACAATGCGAAGGACTACAAATGCCCTAAGTGCCCGGAGCTGTTCCAATCTCAATACCATAAGCAGAAACATCTGATCAAGGTCCACGACATCGGCCATAAATGTACGTACTGCGAGAAAATGTTTACCAGGAACTCGTTTATGAAGGATCATATACGGAGAACGcatttgaaagagaagaatgtggTGTGTTCGGTCTGTAGTGAGAGATTCTTCGATAACTACTTGTTGAGAATGCACATGGTTAAACATGAGGGCCAGAGGAAGTTCAACTGTGAGGTATGCGGGAAGACGTTTCTTAGGCGAAGTAATTTGAGTTCGCATAAGGAAATGCATAAAAAGTATGGACATTTACAGTCCCAAGTATAA
- Protein Sequence
- MDHDLGGLQCGYCFKVMTTKQSFLRHASFCTQHIDCIKTNGLVEADERKPSVKRIRSDLACLLNMSTAIPFKHYLNETKQATCETFTSEKRRRNLQILFNNTTILPFKWRGRCLCFYCGKSYAQYNDFRKHTRSHSPCTTKDYALKVIKGNHIEIKIDVSEISCEICNEPFATFDEIISHLIVKHHLEYDKSVNTPFQEYRLVDFRCIFCEEQFTYFGYLVNHVNNVHPQNSYHCKDCGTFFNKKRDLALHLRHNHREGGYPCSECSQTFKSHSLLRSHQNDFHFRKCKWCGLNFASYSLLLKHTQCDHPDDGSAKCPHCSKQLNSSQGLKQHMNKCKVNMLVKIEHPVDDNFSEDNLLQPKKKQNILQIRQNIQSVLNMSTAMPFKFFAKFCCFYCSKKCVEFDELKEHTISDHPVCDLNSKSMKKCKGERITVKVDITDLRCKLCGRQMETLDVLIDHLISKHEAAYDKSVTGCLEPYKMVKDNIACPFCPNRVFRYFGILLRHINSEHSNNNRICDFCGRSFKSVTNLKVHITYTHTGACECDVCGTKYKNQWCLSRHKAKSHNAKDYKCPKCPELFQSQYHKQKHLIKVHDIGHKCTYCEKMFTRNSFMKDHIRRTHLKEKNVVCSVCSERFFDNYLLRMHMVKHEGQRKFNCEVCGKTFLRRSNLSSHKEMHKKYGHLQSQV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00180666; iTF_00249863; iTF_01494478;
- 90% Identity
- -
- 80% Identity
- -