Adix004160.1
Basic Information
- Insect
- Atrophaneura dixoni
- Gene Symbol
- -
- Assembly
- GCA_018248015.1
- Location
- DWHX01000917.1:11277-13751[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 9.8e-06 0.0016 20.4 3.7 3 23 17 38 16 38 0.96 2 22 8e-05 0.013 17.5 2.7 1 23 43 66 43 66 0.96 3 22 4.6e-05 0.0072 18.3 4.6 2 23 72 94 71 94 0.95 4 22 8.5e-05 0.013 17.5 6.2 1 23 98 121 98 121 0.98 5 22 0.024 3.8 9.7 0.4 2 23 128 149 127 149 0.96 6 22 1.3 2.1e+02 4.3 0.9 1 10 155 164 155 168 0.95 7 22 0.0016 0.24 13.5 3.9 3 23 211 231 208 231 0.95 8 22 0.01 1.6 10.9 0.0 2 23 259 281 258 281 0.94 9 22 0.031 5 9.4 0.9 1 23 301 324 301 324 0.96 10 22 0.0001 0.016 17.2 1.2 1 23 329 352 329 352 0.96 11 22 0.00019 0.029 16.4 2.2 1 23 357 380 357 380 0.95 12 22 0.0085 1.3 11.2 2.1 2 20 383 401 383 405 0.94 13 22 0.0033 0.53 12.4 1.5 2 22 412 432 412 432 0.95 14 22 0.014 2.1 10.5 2.8 1 23 488 511 488 511 0.93 15 22 2.2 3.5e+02 3.6 0.1 3 23 540 561 540 561 0.94 16 22 2.4 3.8e+02 3.4 0.1 3 23 585 607 583 607 0.92 17 22 7.7e-05 0.012 17.6 0.6 3 23 614 635 613 635 0.94 18 22 0.009 1.4 11.1 4.5 2 23 640 662 639 662 0.93 19 22 0.0022 0.35 13.0 2.5 1 23 667 690 667 690 0.97 20 22 3.7e-05 0.0059 18.6 5.5 1 23 694 717 694 717 0.98 21 22 0.00025 0.039 16.0 0.3 2 23 724 745 723 745 0.96 22 22 4e-05 0.0064 18.5 0.7 1 23 751 773 751 773 0.97
Sequence Information
- Coding Sequence
- ATGCTACTGAAGCACATAAGCATATCACATACGGACAATGAGAACATCTGCTCGTACTGCGGGAAATGTTTCCGATCTCATCCCAACCTTCGAGCTCATATTTCGCGAAGCCATAGACACGCCGCATTCAGCTGTACCCATTGCGATATGGAATTCAATACCAATAatcatttacaaatacatttggGCACAGTGCACGGCGCCAAAGTGGTACAATGTCCCGAATGTAAAGAAAGTTTCACGTCTCGCCACCACATGCAGAGGCACATGATTCACGCACATAGTTCAGGCCACAAATGTACCCATTGCGGTAAATTATTCACTAGGAACTCTTTCATGATCAACCACATAAGGCGGACACATTTAAAGGAAAGGAATATACAATGTGCTTTGTGTAGTGAGAGGTTTTTCGACGCACAACGTCTCAAAATGCACATGGTTAAGCACTACGGAGAGCGTAACTTTCACTGTGACCTCTGCGGAAAGAAGTTCCTTTGGAAGAAAAACTTAAGAGATGAAACACTGCAAGCCCCGTGCGAGAGCTTTACCTCCGAGAAGAGGAGGAGGAACTTGCAAATACTATTCAACAACACAACAATTTTGCCTTTTAAATGGCGGGGGAAGTGTCTATGTTTCTATTGCGGGAAGAGCTATGCAGAGTATACCGACTTTAAGAAGCACACGCGCTCCCACGGCCCGTGCACGACGAAAGATTATGCATTAAAAGTGATTAAAGGGAATCACATCGAGATAAAGATCGATGTCTCGGAGATCTCGTGCGAAATTTGCAACGAACCCTTTGCCACatttgatgaaataataaaccatTTGATCGTGAAACACGACATGGAATACGATAAATCTGTAGACACACCATTTCAAGAATACAGGCTGGAGGATTTCCGTTGTCTTTTTTGCGAGGAGCAATTCAAATACTTCGGTTACTTGGTGAACCACGTGAATAATGTACACCCACAAAACAGTTACATTTGCAACGAATGCGATGCGTCCTTTAACAAAAAGAGGGATTTAGCATTGCATTTGCGGCACAACCATCGCGAAGGGGGATACCCTTGCTCCGAGTGCTCGCAAACTTTCAAATCTCACGGCTTACTGCGCAGCCATCAGAACGATTTCCACTACAGAAAATGTAAATGGTGTGGGCTGAACTTCGCTTCCTACAGCCTCCTACTGAAGCATACGCAATGCGATCACCCGGACGACGGCAGCGCCAAGTGTCCGCATTGTTCCAAACAGTTAAACTCATCGCAAGGTTTAAAACAGCACATGAACAGGTGTAAAGTTAACATGCTAGTTAAAATAGATCATCCCGCCGATAGCAATTTCACCGAAGACAATTTGCTGCAACcgaaaaagaaacagaataTATTGCAAATACGTCAAAATATCCAATGTGTACTCAACATGTCTACTGCGTTGCCTTTCAAATTTTTCGCGAAGTATTGTTGCTTCTATTGTTCTAAGAAATTCGTCGAATTCGACGACCTTAAGGAGCACACTATTTTGGAGCATCCCGTATGCGATTTGAAGTCGAAGAGCATGAAGAAATGTAAAGGTGAAAGGATAACGGTGAAAGTGGACACAACGGATTTAGGTTGTAAAGTTTGCGGACGCCAGATGGAGAATTTAGATGTTTTGATAGATCATCTTATATCCAAACATGACGCGGCTTATGATAAATCTGTAACCGGATGTCTAGAACCTTATAAGATGATAAAAGACAACATAGCATGCCCCTTCTGTCCAAATCGCGTGTTTAGATATTTCGGTATCCTATTGAGGCACATAAACTCCGAgcacagtaataataacagaatttGCGATTTCTGCGGCCGCAGTTTCAAGAGCGTGACCAATTTGAAGGTCCACATCACATACACGCACACGGGCGCGTGCGAGTGCGACGTGTGCGGTACCAAATACAAGAACCAGTGGTGCCTGAGCCGGCACAAAGCGAAGAGCCACAACGCGAAGGACTACAAGTGCCCCAAGTGCCCAGAGCTGTTCCAATCACAGTACCATAAGCAGAAACATCTGATCAAAGTCCACGACATCGGCCACAAATGTACGTACTGCGAGAAAATGTTCACCAGGAACTCGTTCATGAAGGACCACATACGGAGGACGCATTTGAAAGAGAAGAATGTTGTGTGTTCTGTCTGTAATGAGAGATTCTTCGACAACTACTTACTGAGAATGCACATGGTCAAACATGAAGGCGCGAGGAGGTTCAACTGCGAGGTGTGCGGGAAGGCGTTCCTTAGGCGTAGTAATTTGACTTCGCATAAGGaaatgcataaaaaatatggacATTTGCAGTCTCGGGTATAA
- Protein Sequence
- MLLKHISISHTDNENICSYCGKCFRSHPNLRAHISRSHRHAAFSCTHCDMEFNTNNHLQIHLGTVHGAKVVQCPECKESFTSRHHMQRHMIHAHSSGHKCTHCGKLFTRNSFMINHIRRTHLKERNIQCALCSERFFDAQRLKMHMVKHYGERNFHCDLCGKKFLWKKNLRDETLQAPCESFTSEKRRRNLQILFNNTTILPFKWRGKCLCFYCGKSYAEYTDFKKHTRSHGPCTTKDYALKVIKGNHIEIKIDVSEISCEICNEPFATFDEIINHLIVKHDMEYDKSVDTPFQEYRLEDFRCLFCEEQFKYFGYLVNHVNNVHPQNSYICNECDASFNKKRDLALHLRHNHREGGYPCSECSQTFKSHGLLRSHQNDFHYRKCKWCGLNFASYSLLLKHTQCDHPDDGSAKCPHCSKQLNSSQGLKQHMNRCKVNMLVKIDHPADSNFTEDNLLQPKKKQNILQIRQNIQCVLNMSTALPFKFFAKYCCFYCSKKFVEFDDLKEHTILEHPVCDLKSKSMKKCKGERITVKVDTTDLGCKVCGRQMENLDVLIDHLISKHDAAYDKSVTGCLEPYKMIKDNIACPFCPNRVFRYFGILLRHINSEHSNNNRICDFCGRSFKSVTNLKVHITYTHTGACECDVCGTKYKNQWCLSRHKAKSHNAKDYKCPKCPELFQSQYHKQKHLIKVHDIGHKCTYCEKMFTRNSFMKDHIRRTHLKEKNVVCSVCNERFFDNYLLRMHMVKHEGARRFNCEVCGKAFLRRSNLTSHKEMHKKYGHLQSRV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01496748;
- 90% Identity
- iTF_01494478;
- 80% Identity
- -