Bhed024089.1
Basic Information
- Insect
- Byasa hedistus
- Gene Symbol
- -
- Assembly
- GCA_029286795.1
- Location
- JAGSMW010000039.1:1257769-1265168[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2.9e-05 0.003 18.7 4.0 3 23 17 38 16 38 0.95 2 19 0.00057 0.061 14.6 2.4 2 23 44 66 43 66 0.93 3 19 0.00054 0.057 14.7 3.1 3 23 106 126 103 126 0.95 4 19 0.0025 0.27 12.6 0.1 2 23 154 176 153 176 0.94 5 19 0.029 3 9.2 1.2 1 23 196 219 196 219 0.96 6 19 0.00025 0.027 15.7 1.2 1 23 224 247 224 247 0.96 7 19 0.00013 0.014 16.6 2.0 1 23 252 275 252 275 0.95 8 19 0.0018 0.19 13.0 2.1 2 20 278 296 278 300 0.94 9 19 0.0024 0.26 12.6 1.5 2 22 307 327 307 327 0.95 10 19 0.015 1.6 10.1 2.9 1 23 383 406 383 406 0.92 11 19 0.52 55 5.3 0.1 2 23 434 456 433 456 0.92 12 19 1.8 1.9e+02 3.6 0.1 3 23 480 502 478 502 0.92 13 19 5.6e-05 0.0059 17.8 0.6 3 23 509 530 508 530 0.94 14 19 0.0066 0.7 11.2 4.5 2 23 535 557 534 557 0.93 15 19 0.0016 0.17 13.2 2.5 1 23 562 585 562 585 0.97 16 19 3e-06 0.00032 21.7 5.2 1 23 589 612 589 612 0.98 17 19 1.3e-05 0.0014 19.7 0.7 2 23 619 640 618 640 0.97 18 19 2.4e-08 2.5e-06 28.4 0.3 1 23 646 668 646 668 0.98 19 19 0.17 18 6.8 0.2 2 23 675 697 675 697 0.93
Sequence Information
- Coding Sequence
- ATGCTACTAAAGCACATAAGCTTATCACATACGGACAATGAGAACATCTGCTCGTACTGCGGGAAATGTTTCCGATCTCATCCCAACCTTCGTGCTCATGTTTCGCGGAGGCATAGGCACGCCGCAATCAGCTGTTCCCATTGCAATATGGAATTCAATACCAATaatcatttacaaatacatttggGCAAAGTGCATGATGAAACACAGCAAGCCCCGTGCGAGAGCTTTACCTCCGAGAAGAGGAGGAGGAATTTGCAAATTCTATTCAACAACACAACAATTTTGCCTTTTAAATGGCGGGGGAAGTGTCTATGTTTCTATTGCGGGGAGAGCTATGCAGATTATACCGACTTTAAGAAACACACGCGCTCGCACGCCCCGTGCACGACGAAAGATTATGCATTGAAAGTGATTAAAGGGAATCACATTGAGATAAAGATCGACGTCTCGGAGATTTCGTGCGAAATTTGTAACGAAACATTTGTCACAtttgatgaaataataaaccaTTTGATCGTAAAACACGGTATGGAATACGATAAATCTGTAGACACACCATTTCAAGAATACAGGCTGGAGGATTTCCGTTGTCTTTTTTGCGAGCAGCAATTCAAATACTTCGGATATTTGGTGAACCACGTGAATAATGTGCATCCTCAAAACAGTTACATCTGTAACGAATGCGAAGCGTCCTTTAACAAAAAGAGAGATTTAGCATTGCATTTGCGGCACAACCATCGCGAAGGGGGATACCCTTGCTCCGAGTGCTCGCAAACATTCGAATCCCACAGCTTGCTGCGCAGCCATCAGAACGATTTCCACTACAGAAAATGTAAATGGTGCGGGCTGACATTCGCTTCCTACAGCCTCCTACTGAAGCATACGCAATGCGATCACCCGGACGACGGCAGCGCCAAATGTCCGCATTGTTCCAAACAGTTAAACTCATCGCAAGGTTTAAAACAGCACATGAACAggtgtaaaattaatatgctAGTTAAAATAGATCCTCCCGCCGATAACAACTTCACCGAAGAAAATTTGCTGCAACCGAAAAAGAAACAGAATATATTGCAAATACGTCAAAATATCCAATGTGTTCTCAACATGTCCACTGCGTTGCCTTTCAAATTTTTCGCGAAGTTCTGTTGCTTCTATTGTTCTAAGAAATTTGTTGAATTCGATGAGCTCAAGGAGCACACTATTTTAGAGCATCCCGTATGCGACTTGAAGTCAAAGAGCATGAAGAAGTGTAAAGGTGAAAGGATAACGGTGAAAGTGGACACAACGGAATTAAGTTGTAAAGTTTGCGGTCGCCAAATGGACAATTTAGATGTTTTGATAGATCATCTTATATCCAAGCATGAAGCGGCCTATGATAAGTCTGTAACCGGATGTCTAGAACCTTATAAGATGATAAAAGACAACATAGCATGCCCGTTTTGTCCAAATCGCGTTTTTAGATATTTCGGTATCCTATTGAGGCACATAAACTCCGAGCACAGTAATAATAACAGAATTTGCGATTTCTGCGGCCGCAGTTTCAAGAGCGTGACCAATTTGAAGGTGCACATCACATACACACACACGGGTGCGTGCGAGTGCGACGTGTGCGGTACTAAATACAAGAACCAATGGTGCCTGAGCCGGCACAAAGCGAAGAGCCACAACGCGAAGGATTACAAGTGCCCCAAGTGCCCAGAGCTGTTCCAATCACAGTACCACAAGCAGAAACATCTGATCAAAGTCCACGACATCGGACACAAATGTACGTACTGCGGGAAAATGTTCACCAGGAACTCATTCATGAAGGACCACATACGGAGGACGCATTTGAAAGAGAAGAATGTTGTGTGTTCTGTCTGTAATGAGAGATTCTTCGACAACTACTTACTCAGAATGCACATGCGAAAGCACTGCGGGGAGAAGAACTACGCGTGCAGCATTTGCGGCAGGCGGTTCGGCAGGTCCAGTAACCTCAGGGCGCATATGAAAGTACACACTGGCAATTTCGGACGGGTCTGCCGGTGGTGCAGACGTGGATTCGTTGATTTTGATACTTTGGATGCGCACGAAAAGGAGTTCCATTATTACGaagaatacaaataa
- Protein Sequence
- MLLKHISLSHTDNENICSYCGKCFRSHPNLRAHVSRRHRHAAISCSHCNMEFNTNNHLQIHLGKVHDETQQAPCESFTSEKRRRNLQILFNNTTILPFKWRGKCLCFYCGESYADYTDFKKHTRSHAPCTTKDYALKVIKGNHIEIKIDVSEISCEICNETFVTFDEIINHLIVKHGMEYDKSVDTPFQEYRLEDFRCLFCEQQFKYFGYLVNHVNNVHPQNSYICNECEASFNKKRDLALHLRHNHREGGYPCSECSQTFESHSLLRSHQNDFHYRKCKWCGLTFASYSLLLKHTQCDHPDDGSAKCPHCSKQLNSSQGLKQHMNRCKINMLVKIDPPADNNFTEENLLQPKKKQNILQIRQNIQCVLNMSTALPFKFFAKFCCFYCSKKFVEFDELKEHTILEHPVCDLKSKSMKKCKGERITVKVDTTELSCKVCGRQMDNLDVLIDHLISKHEAAYDKSVTGCLEPYKMIKDNIACPFCPNRVFRYFGILLRHINSEHSNNNRICDFCGRSFKSVTNLKVHITYTHTGACECDVCGTKYKNQWCLSRHKAKSHNAKDYKCPKCPELFQSQYHKQKHLIKVHDIGHKCTYCGKMFTRNSFMKDHIRRTHLKEKNVVCSVCNERFFDNYLLRMHMRKHCGEKNYACSICGRRFGRSSNLRAHMKVHTGNFGRVCRWCRRGFVDFDTLDAHEKEFHYYEEYK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01496748;
- 90% Identity
- -
- 80% Identity
- -