Taea024760.1
Basic Information
- Insect
- Troides aeacus
- Gene Symbol
- -
- Assembly
- GCA_033220335.2
- Location
- CM067297.1:1441163-1444185[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.22 21 6.4 0.5 2 19 11 28 10 31 0.93 2 26 0.0056 0.54 11.5 2.8 1 23 80 103 80 103 0.96 3 26 0.49 47 5.3 0.5 2 23 131 153 130 153 0.89 4 26 0.018 1.7 9.9 0.3 1 23 175 198 175 198 0.92 5 26 3.9e-06 0.00037 21.4 2.1 3 23 205 226 204 226 0.95 6 26 9.3e-05 0.0089 17.1 1.6 1 23 231 254 231 254 0.94 7 26 0.00036 0.035 15.2 3.6 2 23 260 282 259 282 0.95 8 26 0.00039 0.037 15.1 6.5 1 23 286 309 286 309 0.97 9 26 0.015 1.4 10.1 0.5 2 23 316 337 315 337 0.97 10 26 1.4 1.3e+02 4.0 0.9 1 10 343 352 343 356 0.95 11 26 0.00037 0.036 15.2 4.1 3 23 399 419 397 419 0.97 12 26 0.014 1.3 10.2 0.1 2 23 447 469 446 470 0.94 13 26 0.57 55 5.1 0.5 1 23 489 512 489 512 0.92 14 26 0.0023 0.22 12.7 4.4 1 23 517 540 517 540 0.97 15 26 8.8e-05 0.0084 17.1 2.9 1 23 545 568 545 568 0.95 16 26 0.0088 0.84 10.8 2.1 2 20 571 589 571 593 0.94 17 26 0.0038 0.36 12.0 1.6 2 22 600 620 600 620 0.95 18 26 0.57 54 5.1 5.2 1 23 676 699 676 699 0.95 19 26 1.1 1.1e+02 4.2 0.1 2 23 727 749 726 749 0.92 20 26 2.5 2.4e+02 3.1 0.1 3 23 773 795 771 795 0.92 21 26 8e-05 0.0077 17.3 0.6 3 23 802 823 801 823 0.94 22 26 0.0094 0.9 10.7 4.5 2 23 828 850 827 850 0.93 23 26 0.0023 0.22 12.7 2.5 1 23 855 878 855 878 0.97 24 26 3.9e-05 0.0037 18.3 5.5 1 23 882 905 882 905 0.97 25 26 0.00068 0.065 14.3 0.3 2 23 912 933 911 933 0.96 26 26 7.1e-05 0.0068 17.4 1.1 1 23 939 961 939 961 0.97
Sequence Information
- Coding Sequence
- ATGAAGATGGATCATGACTTAGGCGGACTGCAATGCGGTTACTGTTTTAAAGTTATGACGACGAAGCAGAGTTTTCTTCGGCACGCTTCCTTTTGCACACAACATATCGATTGCATTAAAACTAACGGTTTAGTAGAAGCAGACGAAAGAAAACCTTCAGTGAAAAGGATTAGAAGTGATTTGGCTTGCCTCCTCAACATGTCCACGGCTATCCCATTTAAACACTATCTCAGTAGGTTTAGATGTTTCTTTTGTCCTAAAGACTTTACCGATTGCGATGTTCTCAAACAGCATACCGTCACGGAACACCCATTGTgtgatataaaagttaattctTTGAAATTACGAAATAGAGATGAAGGTCGTATTAAAATTGATGTATCTACTCTTTCTTGCAAAGTTTGCAACGAATCTATGTTTGATTTACGTCACTTGATAAATCATGTAACTGCGGAACATAAAGCCAACGTCGACAAATCTCTAGAATTCCACCTACAGGCATTTAAACTTGTTAAGGATAACTTCTCTTGCCCAATTTGTGATGAAGTTTACAGATATTTCACCATATTATTAAAACACATAAGCTTAAAACATACGGACAATGAGAACATTTGCTCGTACTGCGGGAAATGTTTCAGATCTCAACCCAATCTTCGAGCTCATGTTTCGCGAAGGCATAGACCTGCCACTTTCAGCTGTTCCCATTGCAATATGGAATTCAATaccaataataatttacaaatacatttgGGCAAAGTGCACGGCAACAAAGTTGTTCAATGTCTCGAATGTAAAGAAAGATTTACGTCTCGACACCACATGCAAAGGCACATGATTTATGCACACAGTTCCGGGCACAAATGTACACATTGTGATAAATTGTTTACTAGGAACTCTTTCATGGTCAATCATATAAGGCGGACACATTTAAAGGAGAGGAACATACAATGCGCTTTGTGTAGAGAGAGGTTTTTTGACGCTCAACGACTCAAAATGCACATGATTAAGCATTTCGGAGAGCGTAACTTTCACTGTGACCTCTGTGGAAAGAAGTTCCTTTGGAAGAAGAATTTAAGAGATGAAACAAAGCAAGCCACGTGCGAGACCTTTACCTCCGAGAAGAGGAGGAGAAACTTGCAAATTCTATTCAACAACACAACAATTTTGCCATTCAAATGGCGTGGGAGATGTCTCTGTTTCTATTGCGGAAAGAGCTATGCACAGTATAACGACTTTAGAAAACACACGCGATCCCATGGTCCGTGCACAACAAAAGATTACGCATTGAAAGTGATTAAAGGAAATCACATCGAGATAAAAATCGATGTGTCAGAGATCTCGTGCGAGATCTGCAACGAACCATTCGCCACATTCGATGAAATAATAAGTCATTTAATCGTGAAACACCACATGGAATACGATAAATCTGTAAACACGCCGTTCCAAGAATACAGACTGGTGGATTTCCGTTGTATTTTTTGCGAAGAGCAATTTACTTACTTCGGATATTTGGTCAATCACGTAAATAATGTACACCCTCAAAACAGTTACCACTGCAAAGATTGCGGCACGCTCTTTAATAAAAAGAGAGATCTAGCATTGCACTTACGGCATAACCATCGCGAAGGTGGATACCCTTGCTCCGAGTGTTCTCAAACTTTCAAATCTCACAGTTTACTGCGTAGCCATCAGAACGATTTTCACTTCAGAAAATGTAAATGGTGCGGACTAAACTTTGCTTCCTATAGTCTCCTACTAAAGCACACGCAATGCGACCACCCGGACGACGGCAGCGCCAAATGCCCGCATTGTTCCAAACAGTTAAACTCTTCGCAAGGTTTAAAGCAGCATATGAACAAATGTAAGGTTAACATGTTAGTTAAAATAGAACATCCTGTCGATGACAACTTCTCCGAAGACAATTTGCTGCAACCGAAGAAGAAACAGAATATACTGCAAATACGTCAGAATATCCAAAGTGTTCTCAACATGTCAACTGCGTTGCCTTTCAAGTTTTTCGCGAAATTTTGTTGCTTCTATTGCTCTAAGAAGTGTGTCGAATTTGACGAGCTCAAGGAGCACACTATTTCAGACCATCCGGTATGCGATTTGAATTCGAAAAGCATGAAGAAATGCAAAGGCGAAAGGATAACGGTAAAAGTCGACATAACGGATTTGAGTTGTAAACTTTGCGGTCGACAAATGGAAACTTTGGACGTATTGATAGATCATCTTATATCCAAACATGAAGCGGCTTATGATAAATCTGTAACTGGATGTCTAGAACCATACAAAATGGTGAAAGACAATATAGCGTGCCCATTTTGCCCAAATCGCGTGTTTAGATATTTTGGCATCCTGTTGAGGCACATAAACTCCGAGCatagtaataataacagaaTTTGCGATTTCTGTGGTCGCAGTTTTAAGAGCGTGACTAATTTGAAGGTCCACATCACGTACACGCACACAGGTGCGTGCGAGTGTGACGTGTGCGGAACTAAATACAAGAACCAGTGGTGCCTGAGCCGGCACAAAGCGAAGAGCCACAATGCGAAGGATTACAAATGCCCTAAGTGCCCGGAGCTGTTCCAATCTCAATACCATAAGCAGAAACATCTGATCAAGGTCCACGACATCGGCCATAAATGTACGTACTGCGAGAAAATGTTTACCAGGAACTCGTTTATGAAGGATCATATACGAAGAACGcatttgaaagagaagaatgtggTGTGTTCGGTCTGTAGTGAGAGATTCTTCGATAACTACTTGTTGAGAATGCACATGGTTAAACATGAGGGCCAGAGGAAGTTCAACTGTGAGGTATGCGGGAAAACGTTTCTTAGGCGAAGTAATTTGAGTTCGCATAAGGAAATGCATAAAAAGTATGGACATTTACAGTCCCAAGTATAA
- Protein Sequence
- MKMDHDLGGLQCGYCFKVMTTKQSFLRHASFCTQHIDCIKTNGLVEADERKPSVKRIRSDLACLLNMSTAIPFKHYLSRFRCFFCPKDFTDCDVLKQHTVTEHPLCDIKVNSLKLRNRDEGRIKIDVSTLSCKVCNESMFDLRHLINHVTAEHKANVDKSLEFHLQAFKLVKDNFSCPICDEVYRYFTILLKHISLKHTDNENICSYCGKCFRSQPNLRAHVSRRHRPATFSCSHCNMEFNTNNNLQIHLGKVHGNKVVQCLECKERFTSRHHMQRHMIYAHSSGHKCTHCDKLFTRNSFMVNHIRRTHLKERNIQCALCRERFFDAQRLKMHMIKHFGERNFHCDLCGKKFLWKKNLRDETKQATCETFTSEKRRRNLQILFNNTTILPFKWRGRCLCFYCGKSYAQYNDFRKHTRSHGPCTTKDYALKVIKGNHIEIKIDVSEISCEICNEPFATFDEIISHLIVKHHMEYDKSVNTPFQEYRLVDFRCIFCEEQFTYFGYLVNHVNNVHPQNSYHCKDCGTLFNKKRDLALHLRHNHREGGYPCSECSQTFKSHSLLRSHQNDFHFRKCKWCGLNFASYSLLLKHTQCDHPDDGSAKCPHCSKQLNSSQGLKQHMNKCKVNMLVKIEHPVDDNFSEDNLLQPKKKQNILQIRQNIQSVLNMSTALPFKFFAKFCCFYCSKKCVEFDELKEHTISDHPVCDLNSKSMKKCKGERITVKVDITDLSCKLCGRQMETLDVLIDHLISKHEAAYDKSVTGCLEPYKMVKDNIACPFCPNRVFRYFGILLRHINSEHSNNNRICDFCGRSFKSVTNLKVHITYTHTGACECDVCGTKYKNQWCLSRHKAKSHNAKDYKCPKCPELFQSQYHKQKHLIKVHDIGHKCTYCEKMFTRNSFMKDHIRRTHLKEKNVVCSVCSERFFDNYLLRMHMVKHEGQRKFNCEVCGKTFLRRSNLSSHKEMHKKYGHLQSQV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01496748;
- 90% Identity
- iTF_00180666;
- 80% Identity
- -