Tobl023485.1
Basic Information
- Insect
- Troides oblongomaculatus
- Gene Symbol
- -
- Assembly
- GCA_029032895.1
- Location
- JARDWC010000456.1:515465-519160[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.85 75 4.6 1.0 2 23 95 117 94 117 0.95 2 19 0.084 7.3 7.8 3.0 2 23 141 162 140 162 0.95 3 19 0.2 18 6.6 3.9 1 21 166 186 166 189 0.95 4 19 0.2 17 6.6 1.5 2 21 194 213 194 214 0.96 5 19 0.026 2.2 9.4 3.0 1 23 221 244 221 244 0.91 6 19 0.0052 0.46 11.6 1.1 1 23 251 274 251 274 0.91 7 19 1 91 4.3 2.7 1 23 279 301 279 301 0.96 8 19 0.023 2 9.5 0.4 3 23 355 376 353 376 0.96 9 19 7 6.2e+02 1.7 0.4 1 23 399 422 399 422 0.72 10 19 7.8e-05 0.0069 17.3 0.3 2 23 446 467 445 467 0.96 11 19 0.054 4.8 8.4 0.2 1 21 471 491 471 492 0.91 12 19 0.057 5 8.3 0.5 1 23 533 556 533 556 0.96 13 19 0.1 9.2 7.5 0.3 2 23 582 604 581 604 0.95 14 19 0.41 36 5.6 0.2 2 23 628 649 627 649 0.92 15 19 2.6e-05 0.0023 18.8 0.0 1 23 653 676 653 676 0.97 16 19 0.18 16 6.7 0.8 1 23 680 703 680 703 0.97 17 19 1.1 95 4.3 0.9 1 23 708 733 708 733 0.91 18 19 0.12 11 7.3 4.8 1 22 742 763 742 765 0.88 19 19 0.00027 0.024 15.6 2.9 1 23 774 797 774 797 0.95
Sequence Information
- Coding Sequence
- ATGATGTTGTGGtcgtgtcacttaaaatcagAAACCGTACTGACGGTGAGTCACAAACAGAAAGCGAAACGGAACGCCGAAGTTGTGTTACAGTACTCCACAGTGTACCCGTTCAGGCTGCGCGGCAAGTGTTTACTATGTGTCTACTGCTGTGAGGAGTACAACGAGCCGGCGCTTTACAGGAGCCACATGGACGAGATGCACCAGCGTTTCTCCATATCGACAGCGTTCGCCCATTGCGGCAAAGGTAGAGAGTACCTCAAAGTTGACTGCACGAATTTAAGGTGCCGACTGTGTTCGCAACTCTTTGACACTCTCGATGAAATAGTCCAACACATAAAGCATCAACACCCCACCAGCAAGCTGGACACCAAGTACGAGATAGGTCTCCAACCGTACAAGATCGACAAGGACAAATGGTACTGCTACTTGTGTAACATGAAATTTCCGTCCATAACGAAACTGTGCAGGCATACCACGTCCCACTATCAAAAATTCACTTGCGAAAGCTGCGGCAGGTGCTACTTGTCCAGCGAGGCCCTGAACTACCACATCAGGTGCAGCCACGCCGCTCGGCCTCAATGCAGGAAATGCTGGCAAGAGTTCTCATCATTGGAGATGAAGCGGGAGCACATGAGGCACTCGAAGGCGTGCTGGACATTTTGCTGCATGGATTGCGGCGAGCGGTTCATGTCGTGGGAGTGCAAACAGAAGCATATGGTGGAAGTTCACGGGCAACCCAGCACTACTTACACTTGCCCCGACTGTGGGGAAGTGTTCGAGAAGAGGAAAATATTCTACAACCACTTCAAGATGAATCACACGGACGAGAATTTCGTATGCTCGTGTTGCGGAATGAAATGCGGCTCGAAATTGCAGCTGGAGGACCATCGGCTGGTCCACACCGGGCCAACAAAGGAACTTGACGGACTAAAGAAAGTGAATAAACCAAAAAGACTTTTCGAAAGGTCCGTTAACCTGAACCCTCAGCGGCAAAACGCCGTAATGCTCTTAAAATATTCCACTGCATTTCCATTTAAGACGCGATTTAACAGGATCATTTGCTCGTACTGTCACGACGAGTTTGAATCCATGGCCTCCCTGCGGGAACACATTCAGAGGGACCATTTAAACGCCGATTATAACAGTGCGTTCTACAAAGTAGTAGACGATctaaaaatagatataactaATTTTAAGTGTAACCTCTGCACACGAGAAATGCTAAACGTCGACAGCTTTATGGAGCATATCTCCAAAGAGCACGACATATCTATCAATTTTGACGTGCCCTTCGGCGTGTTACCATATAGACAGAGCTCCACAGGTCTATGGATCTGTTGGGACTGTGACAAAAGCTTCAACGAGTTTTCGAAACTCAACGGTCACCTACGTAGTCATGTAAAAATATTCACATGCGATAAATGCGGAGCCACGTTCCTATCGGAGCAAGGTCTGCGGCAGCACGAGAAAAGCTTCAAATGCTACAAGGCGACGTACAAGCCGCGCTACGGCAAGGCGCTCAAGCACCGCAGTAACACCGAGATCATCCTGCAGTGTTCCACCGCCTGGCCTTTTCGCACCTGGGGGCAGAACTTCAACTGCGTGTTCTGTCGACTGCAGACCAACGACCCGAACGGCCTGAGGACTCACATGGCGACCCGTCACGCCGACTTCGATATCCAACTCGTGTTCAGCAGGAAATTAAGGAAAGAGTTCCTCAAGATCGACATAAGCGACCTTCAATGCAAGCTGTGCTTCCTGCGAATCGATACACTCGACGAACTGATGAACCATCTGAAAAACGACCATAAACAACCGATCAATTTCGACGTCCAGCCCGGCGTTTTGCCGTTCAAACTAAACGACGGCTCCAGCTGGAAGTGCGCCATCTGCAAGATGCAGTTCTCGGGATTCATCACATTAAAAGGCCACACGGCGGAGCATTTCCAGAACTTCGTTTGCGACACCTGCGGCGAGGGCTTCATAACCGAGTCGGCCTTGATCTCGCACACCCGCATCCCGCACGACAACAAGTACAAGTGCACCCGCTGCATCGCCACATTCACCACACTCGAAGACAGGAACGTCCACGTCAAATCCCAACACACCACGTTGCCTTACATGTGCGTCTACTGCAAAGACAAGCCGAGGTTCAGCACGTGGGAGCTCCGGAAGCGGCACCTGATGGAGTTCCACAACTACAAGCCGGGCGCCGAGATGTACGAGTGCGCCACCTGCCACATGACGTTCAAAACCCGGTCCCAGAAGTACCACCACAACGTGAAGGCGCACCGCACGAAGGGCTCCGAGCTGGGCTTCCCCTGCGAACACTGCTCGAGGACCTTCGCCTCCAAGCTGTCTCTGAACAAACATGTCACCAAGAAACACTTCCATTTGTTATAA
- Protein Sequence
- MMLWSCHLKSETVLTVSHKQKAKRNAEVVLQYSTVYPFRLRGKCLLCVYCCEEYNEPALYRSHMDEMHQRFSISTAFAHCGKGREYLKVDCTNLRCRLCSQLFDTLDEIVQHIKHQHPTSKLDTKYEIGLQPYKIDKDKWYCYLCNMKFPSITKLCRHTTSHYQKFTCESCGRCYLSSEALNYHIRCSHAARPQCRKCWQEFSSLEMKREHMRHSKACWTFCCMDCGERFMSWECKQKHMVEVHGQPSTTYTCPDCGEVFEKRKIFYNHFKMNHTDENFVCSCCGMKCGSKLQLEDHRLVHTGPTKELDGLKKVNKPKRLFERSVNLNPQRQNAVMLLKYSTAFPFKTRFNRIICSYCHDEFESMASLREHIQRDHLNADYNSAFYKVVDDLKIDITNFKCNLCTREMLNVDSFMEHISKEHDISINFDVPFGVLPYRQSSTGLWICWDCDKSFNEFSKLNGHLRSHVKIFTCDKCGATFLSEQGLRQHEKSFKCYKATYKPRYGKALKHRSNTEIILQCSTAWPFRTWGQNFNCVFCRLQTNDPNGLRTHMATRHADFDIQLVFSRKLRKEFLKIDISDLQCKLCFLRIDTLDELMNHLKNDHKQPINFDVQPGVLPFKLNDGSSWKCAICKMQFSGFITLKGHTAEHFQNFVCDTCGEGFITESALISHTRIPHDNKYKCTRCIATFTTLEDRNVHVKSQHTTLPYMCVYCKDKPRFSTWELRKRHLMEFHNYKPGAEMYECATCHMTFKTRSQKYHHNVKAHRTKGSELGFPCEHCSRTFASKLSLNKHVTKKHFHLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01495245;
- 90% Identity
- iTF_01115913; iTF_01495245; iTF_01494537; iTF_01496779; iTF_00249974;
- 80% Identity
- -