Taea025300.1
Basic Information
- Insect
- Troides aeacus
- Gene Symbol
- -
- Assembly
- GCA_033220335.2
- Location
- CM067297.1:6111598-6114830[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 1 99 4.3 2.6 2 23 83 104 82 105 0.94 2 21 0.089 8.5 7.7 3.0 2 23 129 150 128 150 0.95 3 21 0.22 21 6.5 3.9 1 21 154 174 154 177 0.95 4 21 0.21 20 6.5 1.5 2 21 182 201 182 202 0.96 5 21 0.027 2.6 9.3 3.0 1 23 209 232 209 232 0.91 6 21 0.0055 0.53 11.5 1.1 1 23 239 262 239 262 0.91 7 21 1.1 1.1e+02 4.2 2.7 1 23 267 289 267 289 0.96 8 21 7.1e-06 0.00068 20.6 0.9 1 20 295 314 295 317 0.94 9 21 6.4e-06 0.00061 20.7 2.2 1 23 323 345 323 346 0.96 10 21 0.025 2.3 9.4 0.4 3 23 406 427 404 427 0.96 11 21 7.5 7.1e+02 1.6 0.4 1 23 450 473 450 473 0.72 12 21 8.3e-05 0.008 17.2 0.3 2 23 497 518 496 518 0.96 13 21 0.058 5.5 8.3 0.2 1 21 522 542 522 543 0.91 14 21 0.06 5.8 8.2 0.5 1 23 584 607 584 607 0.96 15 21 0.11 11 7.4 0.3 2 23 633 655 632 655 0.95 16 21 0.43 42 5.5 0.2 2 23 679 700 678 700 0.92 17 21 2.7e-05 0.0026 18.7 0.0 1 23 704 727 704 727 0.97 18 21 0.19 19 6.6 0.8 1 23 731 754 731 754 0.97 19 21 1.1 1.1e+02 4.2 0.9 1 23 759 784 759 784 0.91 20 21 0.13 12 7.2 4.8 1 22 793 814 793 816 0.88 21 21 0.00029 0.027 15.5 2.9 1 23 825 848 825 848 0.95
Sequence Information
- Coding Sequence
- ATGGGTGATGTAATAATGCTATCGAAAGCGAAACGGAACGCCGAAGTTGTGTTACAGTACTCCACAGTGTACCCGTTCAGGCTGCGCGGCAAGTGTTTACTATGTGTCTACTGCTGTGAGGAGTACAACGAGCCGGCGCTTTACAGGAGCCACATGGACGAGATGCACCAGCGTTTCTCCATATCGACAGCGTTCGCCCATTGCGGCAAAGGTAGAGAGTACCTCAAAGTTGACTGCACGAATTTAAGGTGCCGACTGTGTTCGCAACTCTTTGACACTCTCGATGAAATAGTTCAACACATAAAGCATCACCACCCCACCAGCAAGCTGGACACCAAGTACGAGATAGGTCTCCAACCGTACAAGATCGACAAGGACAAATGGTACTGCTACTTGTGTAACATGAAATTTCCGTCCATAACGAAACTGTGCAGGCATACCACGTCCCACTATCAAAAATTCACTTGCGAAAGCTGCGGCAGGTGCTACTTGTCCAGCGAGGCCCTGAACTACCACATCAGGTGCAGCCACGCCGCTCGGCCTCAATGCAGGAAATGCTGGCAAGAGTTCTCATCATTGGAGATGAAGCGGGAGCACATGAGGCACTCGAAGGCGTGCTGGACATTTTGCTGCATGGATTGCGGCGAGCGGTTCATGTCGTGGGAGTGCAAACAGAAGCATATGGTGGAAGTTCACGGGCAACCCAGCACTACTTACACTTGCCCCGACTGTGGGGAGGTGTTCGAGAAGAGGAAAATATTCTACAACCACTTCAAGATGAATCACACGGACGAGAATTTCGTATGCTCGTGTTGCGGAATGAAATGCGGCTCGAAATTGCAGCTGGAGGACCATCGGCTGGTCCACACCGGCGAGAAGCCTTACGAGTGTGGTGTTTGTAGGAAATCGTTCACGAGGAAGAAGAGCCTCACCCAGCACATGTGGATACATAGCGAGACCAAGAGATTTTCATGTTCCGTTTGTGACAAGCAATTTGCGCAGAAAGTTAGCCTAAAGGGACACATGAAATCTCATCACCCGGAAttcttttcttttttagggCCAACAAAGGAACTTGACGGACTAAAGAAAGTGAATAAACCAAAAAGACTTTTCGAAAGGTCCGTTAACCTGAACCCTCAGCGGCAAAACGCCGTAATGCTCTTAAAATATTCCACTGCATTTCCATTTAAGACGCGCTTTAACAGGATCATTTGCTCGTACTGTCACGACGAGTTTGAATCCATGGCCTCCCTGCGGGAACACATTCAGAGGGACCATTTAAACGCCGATTATAACAGTGCGTTCTACAAAGTAGTAGACGATctaaaaatagatataactaATTTTAAGTGTAACCTCTGCACACGAGAAATGCTAAACGTCGACAGCTTTATGGAGCATATCTCCAAAGAGCACGACATATCTATCAATTTTGACGTGCCCTTCGGCGTGTTACCATATAGACAGAGCTCCACAGGTCTATGGATCTGTTGGGACTGTGACAAAAGCTTCAACGAGTTTTCGAAACTCAACGGTCACCTACGTAGTCATGTAAAGATATTCACATGCGATAAGTGCGGTGCCACGTTCCTATCGGAGCAAGGTCTGCGGCAGCACGAGAAAAGCTTCAAATGCTACAAGGCGACGTACAAGCCGCGCTACGGTAAGGCGCTCAAGCACCGCAGTAACACCGAGATCATCCTGCAGTGTTCCACCGCCTGGCCTTTTCGCACCTGGGGGCAGAACTTCAACTGCGTGTTCTGTCGACTGCAGACCAACGACCCGAACGGCCTCAGGACTCACATGGCGACCCGTCACGCCGACTTCGATATCCAACTCGTGTTCAGCAGGAAATTACGGAAAGAGTTCCTCAAGATCGACATAAGCGACCTTCAATGCAAGCTGTGCTTCCTCCGAATCGATACACTCGACGAACTGATGAACCATCTGAAAAACGACCATAAACAACCGATCAATTTCGACGTCCAGCCCGGCGTTTTACCGTTCAAACTAAACGACGGCTCCAGCTGGAAGTGCGCCATCTGCAAGATGCAGTTCTCGGGATTCATCACATTGAAAGGCCACACGGCGGAGCATTTCCAGAACTTCGTTTGCGACACCTGCGGCGAGGGCTTCATAACCGAGTCGGCCTTGATCTCGCACACCCGCATCCCGCACGACAACAAATACAAGTGCACCCGCTGCATCGCCACATTCACCACACTCGAGGACAGGAACGTCCACGTCAAATCCCAACACACCACGTTGCCTTACATGTGCGTCTACTGCAAAGACAAGCCGAGGTTCAGCACGTGGGAGCTCCGGAAGCGGCACCTGATGGAGTTCCACAACTACAAGCCGGGCGCCGAGATGTACGAGTGCGCCACCTGCCACATGACGTTCAAAACCCGGTCCCAGAAGTACCACCACAACGTGAAGGCGCACCGCACGAAGGGCTCCGAGCTGGGCTTCCCCTGCGAACACTGCTCGAGGACCTTCGCCTCCAAGCTGTCTCTGAACAAACATGTCACCAAGAAACACTTCCATTTGTTATAA
- Protein Sequence
- MGDVIMLSKAKRNAEVVLQYSTVYPFRLRGKCLLCVYCCEEYNEPALYRSHMDEMHQRFSISTAFAHCGKGREYLKVDCTNLRCRLCSQLFDTLDEIVQHIKHHHPTSKLDTKYEIGLQPYKIDKDKWYCYLCNMKFPSITKLCRHTTSHYQKFTCESCGRCYLSSEALNYHIRCSHAARPQCRKCWQEFSSLEMKREHMRHSKACWTFCCMDCGERFMSWECKQKHMVEVHGQPSTTYTCPDCGEVFEKRKIFYNHFKMNHTDENFVCSCCGMKCGSKLQLEDHRLVHTGEKPYECGVCRKSFTRKKSLTQHMWIHSETKRFSCSVCDKQFAQKVSLKGHMKSHHPEFFSFLGPTKELDGLKKVNKPKRLFERSVNLNPQRQNAVMLLKYSTAFPFKTRFNRIICSYCHDEFESMASLREHIQRDHLNADYNSAFYKVVDDLKIDITNFKCNLCTREMLNVDSFMEHISKEHDISINFDVPFGVLPYRQSSTGLWICWDCDKSFNEFSKLNGHLRSHVKIFTCDKCGATFLSEQGLRQHEKSFKCYKATYKPRYGKALKHRSNTEIILQCSTAWPFRTWGQNFNCVFCRLQTNDPNGLRTHMATRHADFDIQLVFSRKLRKEFLKIDISDLQCKLCFLRIDTLDELMNHLKNDHKQPINFDVQPGVLPFKLNDGSSWKCAICKMQFSGFITLKGHTAEHFQNFVCDTCGEGFITESALISHTRIPHDNKYKCTRCIATFTTLEDRNVHVKSQHTTLPYMCVYCKDKPRFSTWELRKRHLMEFHNYKPGAEMYECATCHMTFKTRSQKYHHNVKAHRTKGSELGFPCEHCSRTFASKLSLNKHVTKKHFHLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01495245;
- 90% Identity
- iTF_01496054;
- 80% Identity
- -