Basic Information

Insect: Troides helena
Gene Symbol: -
Assembly: GCA_029286815.1
Location: JAGSMV010000041.1:454802-458437[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 0.92 87 4.5 1.0 2 23 103 125 102 125 0.95

2 21 0.091 8.6 7.6 3.0 2 23 149 170 148 170 0.95

3 21 0.22 21 6.4 3.9 1 21 174 194 174 197 0.95

4 21 0.22 20 6.5 1.5 2 21 202 221 202 222 0.96

5 21 0.028 2.6 9.3 3.0 1 23 229 252 229 252 0.91

6 21 0.0056 0.53 11.4 1.1 1 23 259 282 259 282 0.91

7 21 1.1 1.1e+02 4.2 2.7 1 23 287 309 287 309 0.96

8 21 7.2e-06 0.00069 20.5 0.9 1 20 315 334 315 337 0.94

9 21 6.5e-06 0.00061 20.7 2.2 1 23 343 365 343 366 0.96

10 21 0.025 2.4 9.4 0.4 3 23 426 447 424 447 0.96

11 21 7.6 7.2e+02 1.6 0.4 1 23 470 493 470 493 0.72

12 21 8.5e-05 0.008 17.2 0.3 2 23 517 538 516 538 0.96

13 21 0.059 5.6 8.2 0.2 1 21 542 562 542 563 0.91

14 21 0.061 5.8 8.2 0.5 1 23 604 627 604 627 0.96

15 21 0.11 11 7.3 0.3 2 23 653 675 652 675 0.95

16 21 0.44 42 5.5 0.2 2 23 699 720 698 720 0.92

17 21 2.8e-05 0.0027 18.7 0.0 1 23 724 747 724 747 0.97

18 21 0.2 19 6.6 0.8 1 23 751 774 751 774 0.97

19 21 1.2 1.1e+02 4.1 0.9 1 23 779 804 779 804 0.91

20 21 0.13 12 7.1 4.8 1 22 813 834 813 836 0.88

21 21 0.00029 0.028 15.5 2.9 1 23 845 868 845 868 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	0.92	87	4.5	1.0	2	23	103	125	102	125	0.95
2	21	0.091	8.6	7.6	3.0	2	23	149	170	148	170	0.95
3	21	0.22	21	6.4	3.9	1	21	174	194	174	197	0.95
4	21	0.22	20	6.5	1.5	2	21	202	221	202	222	0.96
5	21	0.028	2.6	9.3	3.0	1	23	229	252	229	252	0.91
6	21	0.0056	0.53	11.4	1.1	1	23	259	282	259	282	0.91
7	21	1.1	1.1e+02	4.2	2.7	1	23	287	309	287	309	0.96
8	21	7.2e-06	0.00069	20.5	0.9	1	20	315	334	315	337	0.94
9	21	6.5e-06	0.00061	20.7	2.2	1	23	343	365	343	366	0.96
10	21	0.025	2.4	9.4	0.4	3	23	426	447	424	447	0.96
11	21	7.6	7.2e+02	1.6	0.4	1	23	470	493	470	493	0.72
12	21	8.5e-05	0.008	17.2	0.3	2	23	517	538	516	538	0.96
13	21	0.059	5.6	8.2	0.2	1	21	542	562	542	563	0.91
14	21	0.061	5.8	8.2	0.5	1	23	604	627	604	627	0.96
15	21	0.11	11	7.3	0.3	2	23	653	675	652	675	0.95
16	21	0.44	42	5.5	0.2	2	23	699	720	698	720	0.92
17	21	2.8e-05	0.0027	18.7	0.0	1	23	724	747	724	747	0.97
18	21	0.2	19	6.6	0.8	1	23	751	774	751	774	0.97
19	21	1.2	1.1e+02	4.1	0.9	1	23	779	804	779	804	0.91
20	21	0.13	12	7.1	4.8	1	22	813	834	813	836	0.88
21	21	0.00029	0.028	15.5	2.9	1	23	845	868	845	868	0.95

Sequence Information

Coding Sequence: ATGACTCAAGTCATCAGacgggcccaacgcggattggtgactgGCGGATTGTTAGAAACCGTACTGACGGTGAGTCACAAACAGAAAGCGAAACGGAACGCCGAAGTTGTGTTACAGTACTCCACAGTGTACCCGTTCAGGCTGCGCGGCAAGTGTTTACTATGTGTCTACTGCTGTGAGGAGTACAACGAGCCGGCGCTTTACAGGAGCCACATGGACGAGATGCACCAGCGTTTCTCCATATCGACAGCGTTCGCCCATTGCGGCAAAGGTAGAGAGTACCTCAAAGTTGACTGCACGAATTTAAGGTGCCGACTGTGTTCGCAACTCTTTGACACTCTCGATGAAATAGTCCAACACATAAAGCATCAACACCCCACCAGCAAGCTGGACACCAAGTACGAGATAGGTCTCCAACCGTACAAGATCGACAAGGACAAATGGTACTGCTACTTGTGTAACATGAAATTTCCGTCCATAACGAAACTGTGCAGGCATACCACGTCCCACTATCAAAAATTCACTTGCGAAAGCTGCGGCAGGTGCTACTTGTCCAGCGAGGCCCTGAACTACCACATCAGGTGCAGCCACGCCGCTCGGCCTCAATGCAGGAAATGCTGGCAAGAGTTCTCATCATTGGAGATGAAGCGGGAGCACATGAGGCACTCGAAGGCGTGCTGGACATTTTGCTGCATGGATTGCGGCGAGCGGTTCATGTCGTGGGAGTGCAAACAGAAGCATATGGTGGAAGTTCACGGGCAACCCAGCACTACTTACACTTGCCCCGACTGTGGGGAAGTGTTCGAGAAGAGGAAAATATTCTACAACCACTTCAAGATGAATCACACGGACGAGAATTTCGTATGCTCGTGTTGCGGAATGAAATGCGGCTCGAAATTGCAGCTGGAGGACCATCGGCTGGTCCACACCGGCGAGAAGCCTTACGAGTGTGGTGTTTGTAGGAAATCGTTCACGAGGAAGAAGAGCCTCACCCAGCACATGTGGATACATAGCGAGACCAAGAGATTTTCATGTTCCGTTTGTGACAAGCAATTTGCGCAGAAAGTTAGCCTAAAGGGACACATGAAATCTCATCACCCGGAATTCTTTTCTTTTTTAGGGCCAACAAAGGAACTTGACGGACTAAAGAAAGTGAATAAACCAAAAAGACTTTTCGAAAGGTCCGTTAACCTGAACCCTCAGCGGCAAAACGCCGTAATGCTCTTAAAATATTCCACTGCATTTCCATTTAAGACGCGCTTTAACAGGATCATTTGCTCGTACTGTCACGACGAGTTTGAATCCATGGCCTCCCTGCGGGAACACATTCAGAGGGACCATTTAAACGCCGATTATAACAGTGCGTTCTACAAAGTAGTAGACGATctaaaaatagatataactaATTTTAAGTGTAACCTCTGCACACGAGAAATGCTAAACGTCGACAGCTTTATGGAGCATATCTCCAAAGAGCACGACATATCTATCAATTTTGACGTGCCCTTCGGCGTGTTACCATATAGACAGAGCTCCACAGGTCTATGGATCTGTTGGGACTGTGACAAAAGCTTCAACGAGTTTTCGAAACTCAACGGTCACCTACGTAGTCATGTAAAGATATTCACATGCGATAAATGCGGAGCCACGTTCCTATCGGAGCAAGGTCTGCGGCAGCACGAGAAAAGCTTCAAATGCTACAAGGCGACGTACAAGCCGCGCTACGGCAAGGCGCTCAAGCACCGCAGTAACACCGAGATCATCCTGCAGTGTTCCACCGCCTGGCCTTTTCGCACCTGGGGGCAGAACTTCAACTGCGTGTTCTGTCGACTGCAGACCAACGACCCGAACGGCCTGAGGACTCACATGGCGACCCGTCACGCCGACTTCGATATCCAACTCGTGTTCAGCAGGAAATTAAGGAAAGAGTTCCTCAAGATCGACATAAGCGACCTTCAATGCAAGCTGTGCTTCCTGCGAATCGATACACTCGACGAACTGATGAACCATCTGAAAAACGACCATAAACAACCGATCAATTTCGACGTCCAGCCCGGCGTTTTGCCGTTCAAACTAAACGACGGCTCCAGCTGGAAGTGCGCCATCTGCAAGATGCAGTTCTCGGGATTCATCACATTGAAAGGCCACACGGCGGAGCATTTCCAGAACTTCGTTTGCGACACCTGCGGCGAGGGCTTCATAACCGAGTCGGCGTTGATCTCGCACACCCGCATCCCGCACGACAACAAGTACAAGTGCACCCGCTGCATCGCCACATTCACCACACTCGAAGACAGGAACGTCCACGTCAAATCCCAACACACCACGTTGCCTTACATGTGCGTCTACTGCAAAGACAAGCCGAGGTTCAGCACGTGGGAGCTCCGGAAGCGGCACCTGATGGAGTTCCACAACTACAAGCCGGGCGCCGAGATGTACGAGTGCGCCACCTGCCACATGACGTTCAAAACCCGGTCCCAGAAGTACCACCACAACGTGAAGGCGCACCGCACGAAGGGCTCCGAGCTGGGCTTCCCCTGCGAACACTGCTCGAGGACCTTCGCCTCCAAGCTGTCTCTGAACAAACATGTCACCAAGAAACACTTCCATTTGTTATAA
Protein Sequence: MTQVIRRAQRGLVTGGLLETVLTVSHKQKAKRNAEVVLQYSTVYPFRLRGKCLLCVYCCEEYNEPALYRSHMDEMHQRFSISTAFAHCGKGREYLKVDCTNLRCRLCSQLFDTLDEIVQHIKHQHPTSKLDTKYEIGLQPYKIDKDKWYCYLCNMKFPSITKLCRHTTSHYQKFTCESCGRCYLSSEALNYHIRCSHAARPQCRKCWQEFSSLEMKREHMRHSKACWTFCCMDCGERFMSWECKQKHMVEVHGQPSTTYTCPDCGEVFEKRKIFYNHFKMNHTDENFVCSCCGMKCGSKLQLEDHRLVHTGEKPYECGVCRKSFTRKKSLTQHMWIHSETKRFSCSVCDKQFAQKVSLKGHMKSHHPEFFSFLGPTKELDGLKKVNKPKRLFERSVNLNPQRQNAVMLLKYSTAFPFKTRFNRIICSYCHDEFESMASLREHIQRDHLNADYNSAFYKVVDDLKIDITNFKCNLCTREMLNVDSFMEHISKEHDISINFDVPFGVLPYRQSSTGLWICWDCDKSFNEFSKLNGHLRSHVKIFTCDKCGATFLSEQGLRQHEKSFKCYKATYKPRYGKALKHRSNTEIILQCSTAWPFRTWGQNFNCVFCRLQTNDPNGLRTHMATRHADFDIQLVFSRKLRKEFLKIDISDLQCKLCFLRIDTLDELMNHLKNDHKQPINFDVQPGVLPFKLNDGSSWKCAICKMQFSGFITLKGHTAEHFQNFVCDTCGEGFITESALISHTRIPHDNKYKCTRCIATFTTLEDRNVHVKSQHTTLPYMCVYCKDKPRFSTWELRKRHLMEFHNYKPGAEMYECATCHMTFKTRSQKYHHNVKAHRTKGSELGFPCEHCSRTFASKLSLNKHVTKKHFHLL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01494537; iTF_01496779; iTF_01115913; iTF_01496054; iTF_00249974;
90% Identity: iTF_01496054;
80% Identity: -