Bhed024031.1
Basic Information
- Insect
- Byasa hedistus
- Gene Symbol
- -
- Assembly
- GCA_029286795.1
- Location
- JAGSMW010000039.1:843425-848279[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.095 10 7.6 0.9 2 23 103 125 102 125 0.95 2 18 0.46 49 5.4 5.0 2 23 149 170 148 170 0.95 3 18 0.21 22 6.5 3.9 1 21 174 194 174 197 0.95 4 18 0.22 24 6.4 1.1 2 21 202 221 202 222 0.95 5 18 0.026 2.7 9.4 3.0 1 23 229 252 229 252 0.91 6 18 0.0069 0.74 11.2 1.3 1 23 259 282 259 282 0.89 7 18 1 1.1e+02 4.3 2.7 1 23 287 309 287 309 0.96 8 18 0.012 1.2 10.5 0.3 3 23 363 384 361 384 0.96 9 18 7.9e-05 0.0084 17.3 0.3 2 23 454 475 453 475 0.96 10 18 0.055 5.8 8.3 0.2 1 21 479 499 479 500 0.91 11 18 0.057 6.1 8.3 0.5 1 23 541 564 541 564 0.96 12 18 0.08 8.5 7.8 0.4 2 23 590 612 589 612 0.95 13 18 0.41 44 5.6 0.2 2 23 636 657 635 657 0.92 14 18 2.6e-05 0.0028 18.8 0.0 1 23 661 684 661 684 0.97 15 18 0.18 19 6.7 0.8 1 23 688 711 688 711 0.97 16 18 5.5 5.8e+02 2.1 0.4 9 23 726 741 716 741 0.84 17 18 0.12 13 7.3 4.8 1 22 750 771 750 773 0.88 18 18 0.00027 0.029 15.6 2.9 1 23 782 805 782 805 0.95
Sequence Information
- Coding Sequence
- atgtgttgtgtaaacatcctaaccagcTCAACATCAATAGAATGGTCACCTTCAGaAACGGTACTGACGGTGAGTCACAAACAGAAAGCGAAACGGAACGCCGAAGTTGTGTTACAGTACTCAACAGTGTACCCGTTCAGGCTGCGCGGGAAGTGTTTACTATGTGTCTACTGCTGCGAGGAGTACAGCGAACCGGCACTTTACAGGAGCCACATGGACGAGATGCACCAGCATTTTTCCATATCGACAGCGTTCGCTCATTGCGGCAAAGGCAGAGAGTACCTCAAGGTCGACTGCACGAACTTAAAGTGTAGACTTTGTTCGCAAATTTTTGATACTCTAGATGATATAGTTCAACACATAAAGCACCAACATCCCACCAACAAACTGGACACGAAGTACGAGATAGGTCTCCAACCGTACAAGATTGATAAGGACAAGTGGCACTGCTACTTGTGTAACATGAAATTTCCGTCCATAACGAAACTGTGCAGGCATACCACTTCACATTATCAAAAATTCACATGCGAAAGCTGCGGCAGGTGCTACTTGTCAAGCGAAGCTTTGAATTATCACATAAGGTGCAGCCACGCAGTTCGGCCTCAATGCAGGAAGTGCTGGCGGGAGTTCCCGTCGTTGGAGATGAAGCGGGAGCACATGAGGCACTCGAAGGCTTGCTGGACTTTCTGCTGCATGGATTGCGGCGAGCGATTCATGTCGTGGGAGTGCAAACAGAAGCACATGGTGGAGGTTCACGGACAGCCTAACACCACGTATACCTGTCCGGATTGCGGGGAGGTGTTCGATAAGAGGAAAATATTCTACACCCATTTCAAAATGAATCACACGGACGAAAGCTTCGTATGCTCGTGTTGCGGGATGAAGTGCGGTTCGAAATTGCAGTTGGAGGACCATCGGCTGGTGCATACCGgGTCAACAGTGGAACTTGACGGAATAAAGAAAGTGAATAGACCAAAAAGACTTTTCGAAAGATCCGTTAACCTGAACCCTCAGAGGCAAAACGCTGTaatgctattaaaatattccacTGCATTTCCATTCAAAACGCGCTTTAACAGAATTATTTGCTCGTACTGTCACGACGAGTTTGAATCTATGGCCTCCCTGCGAGAGCACATACAGACGGACCATATGAACGCCGATTACAACAGTGCGTTCTACAAAGTAGTTGACGATCTCAAAATAGACATAACTAATTTTAAGTGTAATCTCTGTACACGTGACATGCTGAATATCGACACGTTTATGGAGCATATCTCCAAAGAACACGACATATCAATCAATTTCAACGTATCTTTCGGCGTGTTACCTTACAGGCAGGGACCCACAGGCCTATGGATCTGTTGGGACTGTGACAAGAGTTTCAACGAATTTTCGAAACTCAACGGCCACCTGCGTAGCCATGTAAAGATATTCACGTGTGATAAATGCGGTGCTACGTTTCTATCAGAACAAGGTCTACGGCAGCATGAGAAAAGCTTCAAATGCTACAAGGCGACGTACAAGCCGCGCTACGGGAAGGCGCTCAAACATCGCAGCAACACCGAGATCATCCTGCAGTGCTCCACCGCCTGGCCATTCCGCACCTGGGGGCAGAACTTTAATTGTGTCTTCTGTAGACTTCAGACCAACGACCCTAACGGCTTGAGGACACACATGGCGACCCGTCACTCGGACTTCGATATCCAACAAGTCTTCAGCAGGAAATTGCGGAAAGAGTTCCTCAAAATCGACATAAGCGATCTTCAATGCAAGCTGTGCTTCATGCGCATCGATACCCTCGACGAACTGATGAATCACCTGAAAAATGATCACAAACAGCCCATCAATTTCGACGTCCAACCCGGTGTTTTACCGTTTAAACTTAACGACGGCTCCAGCTGGAAGTGCGCCATCTGCAAGATGCAGTTCTCTGGTTTTATCACTCTGAAAGGCCACACAGCGGAGCACTTCCAAAACTTTGTTTGTGATACTTGCGGCGAGGGTTTCATAACGGAATCTGCTTTGATCTCGCACACTCGAATCCCGCACGACAACAAGTACAAGTGCACGCGCTGCATCGCCACTTTCACGACCCTCGAGGACAGGAACGTCCACGTTAAATCCCAACACACGAGCCTGCCTTACATGTGCATCTACTGCAAGGACAAGCCGAGGTTCAGCACGTGGGAGTTGCGCAAGCGGCACCTGATGGAGTTCCACAATTACAAACCGGGCGCCGAAATGTACGAGTGCGCAACCTGTCACATGACTTTCAAAACTCGCTCCCAGAAGTACCACCACAACGTGAAAGCTCACCGCACGAAGGGATCCGAGCTGGGCTTCCCATGTGAACACTGTTCCCGGACATTCGCTTCCAAACTGTCTCTAAACAAACATGTGACtaagaaacattttcatttgttataa
- Protein Sequence
- MCCVNILTSSTSIEWSPSETVLTVSHKQKAKRNAEVVLQYSTVYPFRLRGKCLLCVYCCEEYSEPALYRSHMDEMHQHFSISTAFAHCGKGREYLKVDCTNLKCRLCSQIFDTLDDIVQHIKHQHPTNKLDTKYEIGLQPYKIDKDKWHCYLCNMKFPSITKLCRHTTSHYQKFTCESCGRCYLSSEALNYHIRCSHAVRPQCRKCWREFPSLEMKREHMRHSKACWTFCCMDCGERFMSWECKQKHMVEVHGQPNTTYTCPDCGEVFDKRKIFYTHFKMNHTDESFVCSCCGMKCGSKLQLEDHRLVHTGSTVELDGIKKVNRPKRLFERSVNLNPQRQNAVMLLKYSTAFPFKTRFNRIICSYCHDEFESMASLREHIQTDHMNADYNSAFYKVVDDLKIDITNFKCNLCTRDMLNIDTFMEHISKEHDISINFNVSFGVLPYRQGPTGLWICWDCDKSFNEFSKLNGHLRSHVKIFTCDKCGATFLSEQGLRQHEKSFKCYKATYKPRYGKALKHRSNTEIILQCSTAWPFRTWGQNFNCVFCRLQTNDPNGLRTHMATRHSDFDIQQVFSRKLRKEFLKIDISDLQCKLCFMRIDTLDELMNHLKNDHKQPINFDVQPGVLPFKLNDGSSWKCAICKMQFSGFITLKGHTAEHFQNFVCDTCGEGFITESALISHTRIPHDNKYKCTRCIATFTTLEDRNVHVKSQHTSLPYMCIYCKDKPRFSTWELRKRHLMEFHNYKPGAEMYECATCHMTFKTRSQKYHHNVKAHRTKGSELGFPCEHCSRTFASKLSLNKHVTKKHFHLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01495245;
- 90% Identity
- iTF_01496054;
- 80% Identity
- -