Thel000716.2
Basic Information
- Insect
- Troides helena
- Gene Symbol
- -
- Assembly
- GCA_029286815.1
- Location
- JAGSMV010000001.1:11923982-11937662[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 9.6e-11 1.8e-07 31.4 0.0 4 39 170 206 169 210 0.90 2 4 1.3e-12 2.4e-09 37.3 0.1 3 39 223 259 221 262 0.93 3 4 2.1e-15 4e-12 46.3 0.1 2 45 277 321 276 321 0.96 4 4 6.7e-18 1.2e-14 54.3 0.0 1 44 328 372 328 373 0.96
Sequence Information
- Coding Sequence
- ATGTCCCACTACGGGCCGTTTCAAGTGAAGTGCGAGCCGCCATCTGATGGAGAAGACAGTAATTCACACTATCCACATAACTTCACAACAAACCAGCTGAGCACCTCGGAGCTGGTGCCGGTGAAAGTGGAAGCGCCGCAGCGGGCAGGAGAGAATGCTTCCTCTCACATCTTGCATCACTTGCAGGTGGGTGGCGTGCTGGAATTGGCACCGCTCGCACCGGCCGCACCCTCCGCCACgccggtgcgcgcgcgccgctgcccgccgccgcgcgcctcgCCGGACTGCCTCGAGACGCTGGAGCCGGCGCGCGCTGACACAGGCGCCACACTCCTGGACAGGCATATACAAATGCTGAACGCTAGCGAAGTGGAGTCCGATTTCGTCCCTTTGTTATCTGTCAAGGACGAGCCCTTATCGGAGGGTGaGCAGCAGCAGTGCAGCGATGAGGCCAGCGAGTGCTCCGGGCCTGAGGCGCGCGGCAGCCCCAAGGGATGGTCCGCGCGCGACATGGAGCGCGCGCTGCAGGCGCTGCGGGACCGCCGCATGAGCCTCACAAAGGCATCAGCCACGTACGGGATCCCGTCGACGACGCTGTGGCAGCGCGCGCACCGGCTCGGCATCGACACGCCCAAGAAGGACGGCGCCGCCAAGAGCTGGAACGACGGCGACCTGCGCGccgcgctgcacgcgctgcGGGCCGGCGCGCTCTCCGCGAACAAGGCGAGCAAGGCGTACGGTATCCCGAGCAGCACGCTGTACAAGATCGCGCGTCGCGAGGGCATCCGGCTGGCGGCGCCATTCAACGCGGCGCCGACCGCGTGGCGCCGCGGGGACCTGCAGCGCGCGCTCGCCGCCATCCGCTGCGGCGCGGCGTCCGTGCAGCGCGCCGCAGCGCAGTACGGCATACCCACCGGAACCCTGTATGGAAGGTGTAAGCGGGAAGGAATCGAGCTGTCCCGGTCTAATCCCACGCCGTGGTCGGAAGATGCGATGGGCGAGGCGCTCGAGGCGGTCAGGATCGGCCAGATGTCCATCAACCAGGCGGCGATTCACTTCAACTTGCCTTACTCCTCGCTGTACGGCAGGTTCAAGCGGTGCAAGTACCAGCTGCAGAGTTTTCAAACGAATCAACCGATGGAAGCACAGAGTACACTCGAATCAGAACAACAAGCCCAACAACAGAATATGGAGTCCTTGGAGTACTACAATGCGATGCCGCTCTCCAATGATGACTACGCGGGCGTGCACCTTCCATACAGCCAGCTTCTGACGATGGGCGACGCGCATGAGCACGCGCTGTATGAACAGTGCGGCTCGGGGTTGCACTATGCACAGGGCTGTCACAGCGGGGTGGCCACCAGTTGA
- Protein Sequence
- MSHYGPFQVKCEPPSDGEDSNSHYPHNFTTNQLSTSELVPVKVEAPQRAGENASSHILHHLQVGGVLELAPLAPAAPSATPVRARRCPPPRASPDCLETLEPARADTGATLLDRHIQMLNASEVESDFVPLLSVKDEPLSEGEQQQCSDEASECSGPEARGSPKGWSARDMERALQALRDRRMSLTKASATYGIPSTTLWQRAHRLGIDTPKKDGAAKSWNDGDLRAALHALRAGALSANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRGDLQRALAAIRCGAASVQRAAAQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRIGQMSINQAAIHFNLPYSSLYGRFKRCKYQLQSFQTNQPMEAQSTLESEQQAQQQNMESLEYYNAMPLSNDDYAGVHLPYSQLLTMGDAHEHALYEQCGSGLHYAQGCHSGVATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00249637; iTF_01115633; iTF_01495704; iTF_01494240; iTF_01496480;
- 90% Identity
- iTF_00249637; iTF_01115633; iTF_01495704; iTF_01494240; iTF_01496480;
- 80% Identity
- iTF_01495704; iTF_01496480;