Oale000108.1
Basic Information
- Insect
- Ornithoptera alexandrae
- Gene Symbol
- -
- Assembly
- GCA_029030555.1
- Location
- JARDVY010000004.1:466548-476457[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7e-11 1.7e-07 31.4 0.0 4 39 170 206 169 210 0.90 2 4 9.7e-13 2.4e-09 37.3 0.1 3 39 223 259 221 262 0.93 3 4 1.6e-15 3.8e-12 46.3 0.1 2 45 277 321 276 321 0.96 4 4 4.9e-18 1.2e-14 54.3 0.0 1 44 328 372 328 373 0.96
Sequence Information
- Coding Sequence
- ATGTCCCACTACGGGCCGTTTCAAGTGAAGTGCGAGCCGCCATCTGATGGAGAAGACAGTAATTCACACTATCCACATAACTTCACAACAAATCAGCTGAGCACCTCGGAGCTCGTGCCGGTGAAGGTGGAAGCGCCGGAGCGGGCGGGAGAGAATGCTTCCTCTCACATCTTGCACCACTTGCAGGTGGGTGGCGTGCTGGAGTTGGCACCGCTCGCACCGGCCGCTCCCTCTGCTACAccggtgcgcgcgcgccgctgcCCGCCACCGCGCGCCTCGCCTGACAGCCTCGAGACGCTGGAGCCGGCGCGCGCTGATACAGGCGCTACACTCCTGGACAGGCATATACAAATGCTGAACGCTAGCGAAGTGGAGTCCGATTTCGTCCCTTTGTTATCTGTCAAGGACGAGCCCTTGTCGGAGGGGGaGCAGCAGCAGTGCAGCGATGAGGCCAGTGAGTGCTCTGGGCCGGAGGCGCGCGTCAGCCCCAAGGGCTGGTCCGCGCGCGACATGGAGCGCGCGCTGCAGGCGCTGCGGGACCGCCGCATGAGCCTCACAAAGGCGTCAGCCACGTACGGGATCCCGTCGACGACGCTGTGGCAGCGCGCGCACCGGCTGGGCATCGACACGCCCAAGAAGGACGGCGCTGCCAAGAGCTGGAACGACGGCGACCTGCGCGCCGCGCTGCACGCGCTGCGGGCGGGCGCGCTCTCCGCGAACAAGGCGAGCAAGGCGTACGGTATCCCGAGCAGCACGCTGTACAAGATCGCGCGTCGCGAGGGCATCCGGCTGGCGGCGCCGTTCAACGCCGCGCCGACCGCGTGGCGCCGCGGGGACCTGCAGCGCGCGCTGGCCGCCATCCGCTGCGGCGCGGCGTCCGTGCAGCGCGCCGCGGCGCAGTACGGCATACCTACCgGAACCCTGTACGGAAGGTGTAAGCGGGAAGGAATTGAGCTGTCCCGCTCCAACCCCACGCCGTGGTCGGAAGACGCGATGGGCGAGGCGCTCGAGGCGGTCAGGATCGGCCAGATGTCCATCAACCAGGCGGCGATTCACTTCAACTTGCCGTACTCCTCGCTGTACGGCAGGTTCAAGCGATGCAAGTACCAGTTGCAGAGTTTTCAAACGAACCAACCGATGGAAGTACAGAATACATTCGAATCAGAACAACAAGCCCAACAACAGAACACGGAGTCCTTGGAGTACTACAATGCGATGCCGCTCTCCAATGATGACTACGCGGGCGTGCACCTTCCATATAGCCAGCTTCTGGCGATGGGCGACGCGCATGAGCACGCGCTGTATGAACAGTGCGGCTCGGGGCTGCACTATTCACAGGGCTGTCACAGCGGAGTGGCCACCAGTTGA
- Protein Sequence
- MSHYGPFQVKCEPPSDGEDSNSHYPHNFTTNQLSTSELVPVKVEAPERAGENASSHILHHLQVGGVLELAPLAPAAPSATPVRARRCPPPRASPDSLETLEPARADTGATLLDRHIQMLNASEVESDFVPLLSVKDEPLSEGEQQQCSDEASECSGPEARVSPKGWSARDMERALQALRDRRMSLTKASATYGIPSTTLWQRAHRLGIDTPKKDGAAKSWNDGDLRAALHALRAGALSANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRGDLQRALAAIRCGAASVQRAAAQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRIGQMSINQAAIHFNLPYSSLYGRFKRCKYQLQSFQTNQPMEVQNTFESEQQAQQQNTESLEYYNAMPLSNDDYAGVHLPYSQLLAMGDAHEHALYEQCGSGLHYSQGCHSGVATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01494981;
- 90% Identity
- iTF_01494981;
- 80% Identity
- -