Trha015673.1
Basic Information
- Insect
- Troides rhadamantus
- Gene Symbol
- -
- Assembly
- GCA_018246435.1
- Location
- DWLU01006176.1:1-4941[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 8.7e-11 4.8e-07 31.5 0.0 4 39 138 174 137 178 0.90 2 4 1.2e-12 6.6e-09 37.5 0.1 3 39 191 227 189 230 0.93 3 4 1.9e-15 1.1e-11 46.4 0.1 2 45 245 289 244 289 0.96 4 4 6.1e-18 3.3e-14 54.4 0.0 1 44 296 340 296 341 0.96
Sequence Information
- Coding Sequence
- CTGAGCACCTCTGAGCTGGTGCCGGTGAAAGTGGAAGCGCCGCAGCGGGCAGGAGAGAATGCTTCCTCTCACATCTTGCATCACTTGCAGGTGGGTGGCGTGCTGGAATTGGCGCCGCTCGCACCGGCCGCACCCTCCGCCACtccggtgcgcgcgcgccgctgcccgccgccgcgcgcctcgCCGGACTGCCTCGAGACGCTGGAGCCGGCGCGCGCTGACACAgGCGCCACACTCCTGGACAGGCATATACAAATGCTGAACGCTAGCGAAGTGGAGTCCGATTTCGTCCCTTTGTTATCTGTCAAGGACGAGCCCTTATCGGAGGGTGaGCAGCAGCAGTGCAGCGATGAGGCCAGCGAGTGCTCCGGGCCTGAGGCGCGCGGCAGCCCCAAGGGCTGGTCCGCGCGCGACATGGAGCGCGCGCTGCAGGCGCTGCGGGACCGCCGCATGAGCCTCACAAAGGCATCAGCCACGTACGGGATTCCGTCGACGACGCTGTGGCAGCGCGCGCACCGGCTGGGCATCGACACGCCCAAGAAGGACGGCGCCGCCAAGAGCTGGAACGACGGCGACCTGCGCGCCGCGCTGCACGCGCTGCGGGCCGGCGCGCTCTCCGCGAACAAGGCGAGCAAGGCATACGGTATCCCGAGCAGCACGCTGTACAAGATCGCACGTCGCGAGGGCATCCGGCTGGCGGCGCCATTCAACGCGGCGCCGACCGCGTGGCGCCGCGGGGACCTGCAGCGCGCGCTCGCCGCCATCCGCTGCGGCGCGGCGTCCGTGCAGCGCGCCGCAGCGCAGTACGGCATACCCACCGGAACCCTGTATGGAAGGTGTAAGCGGGAAGGAATCGAGCTGTCCCGGTCTAATCCCACGCCGTGGTCGGAAGATGCGATGGGCGAGGCGCTCGAGGCGGTCAGGATCGGCCAGATGTCCATCAACCAGGCGGCGATTCACTTCAACTTGCCTTACTCCTCGCTGTACGGCAGGTTCAAGCGGTGCAAGTACCAGCTGCAGAGTTTTCAAACGAATCAACCGATGGAAGCACAGAGTACACTCGAATCAGAACAACAAGCCCAACAACAGAATATGGAGTCCTTGGAGTACTACAATGCGATGCCGCTCTCCAATGATGACTACGCGGGCGTGCACCTTCCATACAGCCAGCTTCTGACGATGGGCGACGCGCATGAGCACGCGCTGTATGAACAGTGCGGCTCGGGGTTGCACTATGCACAGGGCTGTCACAGCGGGGTGGCCACCAGTTGA
- Protein Sequence
- LSTSELVPVKVEAPQRAGENASSHILHHLQVGGVLELAPLAPAAPSATPVRARRCPPPRASPDCLETLEPARADTGATLLDRHIQMLNASEVESDFVPLLSVKDEPLSEGEQQQCSDEASECSGPEARGSPKGWSARDMERALQALRDRRMSLTKASATYGIPSTTLWQRAHRLGIDTPKKDGAAKSWNDGDLRAALHALRAGALSANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRGDLQRALAAIRCGAASVQRAAAQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRIGQMSINQAAIHFNLPYSSLYGRFKRCKYQLQSFQTNQPMEAQSTLESEQQAQQQNMESLEYYNAMPLSNDDYAGVHLPYSQLLTMGDAHEHALYEQCGSGLHYAQGCHSGVATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01494981;
- 90% Identity
- iTF_01494981;
- 80% Identity
- iTF_01494981;