Bhed022180.1
Basic Information
- Insect
- Byasa hedistus
- Gene Symbol
- -
- Assembly
- GCA_029286795.1
- Location
- JAGSMW010000031.1:2926788-2933400[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.7e-11 2e-07 31.4 0.0 4 39 170 206 169 210 0.90 2 4 8.6e-13 2.3e-09 37.6 0.2 2 39 222 259 221 262 0.93 3 4 1.7e-15 4.5e-12 46.3 0.1 2 45 277 321 276 321 0.96 4 4 6.5e-18 1.7e-14 54.0 0.0 1 43 328 371 328 372 0.96
Sequence Information
- Coding Sequence
- atgtCCGACTACGGGCTGTCACGAGTGAAATGCGAGCCGCCATCTGATGGAGAGGACAGTAATTTGCACTACACACATAACTTCGCAACTAATCAGCTGAGTACCCCGGAGCTCGTGCCAGTGAAAGTGGAAGCGGCGGAAACGGCTGAAGAGAATGTTTCCTCGCACATCTTGCATCATTTGcagGTGGGCGGCGTGCTGGAACtggcgccgcccgcgccggcTGCGCCCGCGGCCACGccggtgcgcgcgcgccgctgcccgccgccgcgcgcctcGCCCGACAGCCTCGAAACGCTCGAGCCGGCGCGCGCCGACACTgGCGCCACACTTCTGGACAGACATATAAAGATGCTGAACGCTAGCGAAGTGGAGTCCGACTTTGTCCCCCTGCTGGCGGTCAAGGACGAGCCCTTATCGGAAGGGGaGCAGCAGCAGTGTAGCGACGAGGCCAGCGAGTGCTCCGGGCCGGAGGCGCGCGGTAGCCCCAAGGGCTGGTCTGCGCGCGACATGGAGCGCGCGCTGCAGGCACTGCGAGACCGCCGCATGAGCCTCACCAAGGCATCAGCTACGTACGGGATCCCGTCGACGACGCTGTGGCAGCGCGCGCACCGGCTGGGCATCGACACGCCCAAGAAGGACGGCGCCGCCAAGAGCTGGAGCGACGGCGACCTGCGCGCCGCGCTGCACGCGCTGCGGGCCGGCGCGCTCTCCGCGAACAAGGCGAGCAAGGCGTACGGTATCCCGAGCAGCACGCTGTACAAGATCGCTCGTCGTGAGGGCATCCGGCTGGCTGCGCCGTTCAACGCCGCGCCGACCGCGTGGCGCCGCGGCGACCTGCAGCGCGCGCTCGCCGCCATCCGCTGCGGCGCGGCGTCCGTGCAGCGCGCCGCGGCGCAGTACGGCATACCCACCGGAACTCTGTACGGAAGGTGCAAACGGGAGGGGATCGAGCTGTCCCGCTCCAACCCCACGCCGTGGTCAGAAGACGCGATGGGCGAAGCGCTCGAGGCGGTCAGGATCGGTCAGATGTCCATCAACCAGGCGGCGATTCACTTCAACTTGCCGTACTCCTCGCTGTACGGTAGGTTCAAGCGGTGCAAGTACCAGCTTCAGGGTTTTCAAACAAATCAACCAATGGAAGTGCAGAACACACTGGAAACGGAACAACAGGCCCAACAGCAAACCCAGGAGTCCTTGGAGTACTACAACGCGATGCCCCTCTCCAATGACGACTATGCAGGCCTACACCTTCCATACAGCCAGCTGCTGGTGATGGGCGACACGCACGAACACATGCTGTATGAACAGTGCGGGTCTGGATTGAACTATGCACAGGGATGTCACAGCGGAGTGGCTACCAGTTGA
- Protein Sequence
- MSDYGLSRVKCEPPSDGEDSNLHYTHNFATNQLSTPELVPVKVEAAETAEENVSSHILHHLQVGGVLELAPPAPAAPAATPVRARRCPPPRASPDSLETLEPARADTGATLLDRHIKMLNASEVESDFVPLLAVKDEPLSEGEQQQCSDEASECSGPEARGSPKGWSARDMERALQALRDRRMSLTKASATYGIPSTTLWQRAHRLGIDTPKKDGAAKSWSDGDLRAALHALRAGALSANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRGDLQRALAAIRCGAASVQRAAAQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRIGQMSINQAAIHFNLPYSSLYGRFKRCKYQLQGFQTNQPMEVQNTLETEQQAQQQTQESLEYYNAMPLSNDDYAGLHLPYSQLLVMGDTHEHMLYEQCGSGLNYAQGCHSGVATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01494981;
- 90% Identity
- iTF_01494981;
- 80% Identity
- -