Tni003439.1
Basic Information
- Insect
- Trichoplusia ni
- Gene Symbol
- PAXBP1
- Assembly
- GCA_003590095.1
- Location
- NC:9537094-9542814[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.011 85 2.3 0.0 176 205 184 213 172 217 0.80 2 2 6.2e-16 4.6e-12 45.8 0.6 3 190 204 374 202 386 0.81
Sequence Information
- Coding Sequence
- ATGTCGTTTTACTTATCTGTGTCAATAAATTTAAGCGCTCTAGAAGAGCTTCAGATCGAACGCGACGTGACCTCGAAGACTCAGGCTGAGCTCCGTGACAGGTTGTTGACAGCGGCGCGGATCCGCGAGAGCCGGGCCGCGCGCTGCGGCGAGCTGGACGCCGCGTATCGGAGGGCGCAAGCCATACGCGGCTACCTCACTGACCTCATCGAGTGCTTGGATGAAAAGATGCCGCAGCTGGAGGCGCTGGAGGCCCGAGCGTTAGCTCTACACAAGCGTCGCTGCGAGTTCGTCATCGAGCGGCGCCGCGCGGACCTGCGCGACCAGGCGCAAGACGTACTCGCTCCGCCCGGTCGCGCGAAAGGCGTGGAGTGTGAGGAAAAGACGCGTCGTGCAGCCGAGCGTGAGGGCCGGCGTCGCGCGCGGCGCCTGGTGCGGGaggccgcggccgccgccgccggggCCGCGCTGCCGCACCGGGACGGGGACTCGGACGACGACGACCTGCCGCCCACGCAGCTGCACCAGCACAACCACGAGAGAGAGAGCATCCAGGCGGGCGCGGCGCAGGTGTTCGCGGACGCGCTGCCGGCGTGGCGCAGCGTGCGCGGCGTGTGCGCGCGGCTGGCGCgctggcgggcgcgcgcgcgcctGCTCTACAGCGACGCCTACGTGGCCGACTGCCTGCCCAAGCTGCTGGCGCCCTACGTCCGCCATCAGCTCATTTTATGGAACCCGCTCGCTGACGAAGACAATGAGGATTACGAGAAAATGGATTGGTACAAATGTGTGATGATGTACGGCGTGGGCCAGCAGCCGGGCGGCGGCTCGTCGGGCTCGGAGTCGGGCTCAGAGGACGAGGTCGAGGACACGCCCCCTAAGGTCACCGAGGACAGCGTGCGCGCTGACCCCGACCTCATGCTCGTGCCCACGCTTGTCAGCAGGGTCGTGCTGCCCAAGCTTACAGAGCTGGTGGAGCAGGCGTGGGACCCGCTGTGCGTGCGCGCGTGCGTGCGGCTGCGGCAGCTGCTGCtgcgcgccgccgcgctgcccgccgcccgcgccgcgctgcgCCGCCTGGCCGCCGCGCTGCGCGCCAGGCTCGCCGCCACGCTCGCGGCCGACGTCTTCCTGCCCGCGCTCACGCCGCAGGTAATGGAAGGTCCTGGCGGCGCGTTCTGGCGTCGCTGCTTGGGCTCTGGCGTGCGTCTGTTGCGGGCCTCACTGGCGCTCACCGGCCCGCCCGAACTGCTAAATGCAGACCCGCTGGTGCTGTCACTTATAGAAtga
- Protein Sequence
- MSFYLSVSINLSALEELQIERDVTSKTQAELRDRLLTAARIRESRAARCGELDAAYRRAQAIRGYLTDLIECLDEKMPQLEALEARALALHKRRCEFVIERRRADLRDQAQDVLAPPGRAKGVECEEKTRRAAEREGRRRARRLVREAAAAAAGAALPHRDGDSDDDDLPPTQLHQHNHERESIQAGAAQVFADALPAWRSVRGVCARLARWRARARLLYSDAYVADCLPKLLAPYVRHQLILWNPLADEDNEDYEKMDWYKCVMMYGVGQQPGGGSSGSESGSEDEVEDTPPKVTEDSVRADPDLMLVPTLVSRVVLPKLTELVEQAWDPLCVRACVRLRQLLLRAAALPAARAALRRLAAALRARLAATLAADVFLPALTPQVMEGPGGAFWRRCLGSGVRLLRASLALTGPPELLNADPLVLSLIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01221591; iTF_00000353; iTF_00185329; iTF_00186196;
- 90% Identity
- iTF_01221591;
- 80% Identity
- -