Apul030912.1
Basic Information
- Insect
- Autographa pulchrina
- Gene Symbol
- PAXBP1
- Assembly
- GCA_905475315.1
- Location
- FR997764.1:12591247-12598137[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.0014 21 5.4 0.0 174 205 185 216 172 221 0.80 2 2 1e-15 1.6e-11 45.2 0.2 3 190 207 374 205 386 0.73
Sequence Information
- Coding Sequence
- ATGTTATCTTTCCGAGGTGTCAATGGATCGTCTTATTTAATTACTAACCTAGAAGAGCTCCAAATCGAGCGCGACGCGACATCCAAGACACAATCGGAGCTCCGCGACCGCCTGCTGACGTCTGCCCGCATCCGCGAGAGCAGAGCCGCGCGGTGCGGGGAGCTCGACGCCGCGTACCGCCGCGCGCAGGCTATACGCGGGTACCTCACCGATCTGATAGAGTGTCTGGATGAAAAGATGCCGCAGCTAGAGGCGTTGGAAGCCCGCGCGCTGGCGCTGCACAAGCGTCGCTGCGAGTTCGTCATCGAGCGCCGACGTGCAGACCTCAGGGACCAGGCGCAAGACGTGCTCGCTCCGCCTGGTCGCGCAAAACCAGCGGAGTCTGAGGAGAAGACCCGGCGAGCCGCCGAGCGTGAGGGCCGGCGGCGGGCGCGGCGGCTGCTGCGGGAGGCCGCCGCCGCCGCTGCCGGGGCCGCCATCCCGCACCGCGACGGCGACTCCGACGACGACGACCTGCCGCCCAGCGAGCTGCACCATCATAACCACGAGAGAGAGAGTATCCGTTCGACCGCGGGGCAGGTGTTCGCGGACGCGCTGGCGGCGTGGCGCAGCGTGCGCGGCGTGTGCGCGCGGCTGTCGCGCTGGCGGGCGCGGGCCGCTGACCTCTACACCGACGCCTACGTGCCCGACTGCCTGCCCAAGCTGCTGGCGCCATACGTCAGACATCAGCTTATACTATGGAACCCGTTGGCTGATGAAGACAACGAGGATTACGAGAAAATGGATTGGTACAAATGTGTAATGATGTACGGCATGGGCCAACACGGCGGCGGGTCGTCGGGCTCGGAGTCGGGGTCGGAGGGCGAGGTCGCGGCCGTGCGGGTCTCGGAGGCCAGCGTGCGGGCCGACCCCGACCTCATGCTCGTGCCTACGTTGGTCAGCAGGGTCGTGCTGCCTAAGCTTACAGAGCTAGTAGAGCATGCGTGGGACCCGATGTGTGTCCGCGCATGCGTGCGGCTGCGGCAGCTGGTGTTGCGGGCGGCGTCGCTCCCGCATACGGGCCCCGCACTGCGCAAGCTGGCGGCGGCGCTGCGGGGGCGCTTGGCAGCCTCGCTTGCTGCTGATGTCTTCCTGCCCGCACTCACGCCGCAAGTGATGGAGGGCCCTGGCGGGTTGTTCTGGCGTCGCTGCCTGGGCACGGGCGTGCGGCTGCTGCGTGCCACGCTGGCGCTCACCGGCCCGCCCGCGCTACTACACGCCGACCCGCTCGTGCTTTCACTCATAGAGACGCTGTGTTGTGGCGCGGGAGCAGCAGCGGGCACGGCGGCAGCGAGCGCGGCGGCGGCGCTGGCGGAGAGCCTGCCGCGCGCCGGCCGCCTGCGCCGCGCCGCGCTCGCCCGCCTCGCCGCGCTCGCTGCACTCGCACTCTCCCGTCTGCAGACCGACAACCCGCTGCATCTGAAAGCTCTAGAACAAGCAAGATCAGTGATAGCGGAAGCACGAGCGGTTGAATGA
- Protein Sequence
- MLSFRGVNGSSYLITNLEELQIERDATSKTQSELRDRLLTSARIRESRAARCGELDAAYRRAQAIRGYLTDLIECLDEKMPQLEALEARALALHKRRCEFVIERRRADLRDQAQDVLAPPGRAKPAESEEKTRRAAEREGRRRARRLLREAAAAAAGAAIPHRDGDSDDDDLPPSELHHHNHERESIRSTAGQVFADALAAWRSVRGVCARLSRWRARAADLYTDAYVPDCLPKLLAPYVRHQLILWNPLADEDNEDYEKMDWYKCVMMYGMGQHGGGSSGSESGSEGEVAAVRVSEASVRADPDLMLVPTLVSRVVLPKLTELVEHAWDPMCVRACVRLRQLVLRAASLPHTGPALRKLAAALRGRLAASLAADVFLPALTPQVMEGPGGLFWRRCLGTGVRLLRATLALTGPPALLHADPLVLSLIETLCCGAGAAAGTAAASAAAALAESLPRAGRLRRAALARLAALAALALSRLQTDNPLHLKALEQARSVIAEARAVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01487716;
- 90% Identity
- iTF_01221591;
- 80% Identity
- -