Atri020683.1
Basic Information
- Insect
- Abrostola tripartita
- Gene Symbol
- PAXBP1
- Assembly
- GCA_905340225.1
- Location
- HG996489.1:12225426-12229979[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.0019 21 4.9 0.0 176 206 178 208 166 216 0.79 2 2 4.5e-14 5.1e-10 39.7 0.1 3 188 198 368 196 376 0.76
Sequence Information
- Coding Sequence
- ATGATTATTATCCCCTACAGGTTAGAAGAGCTCGAAACAGAGAGGAAAGCGACATCTAAGACGCAGACAGAGCTCCGAGACCGTCTACTGACGTCAGCGCGCATCCGCGAGAGCCGCGCGGCGCGGTGCGGGGAGCTGGACGCGGCCTACCGGCGCGCGCAGGCCATCCGCGGGTACCTCACCGACCTCATCGAGTGTCTGGACGAGAAGATGCCGCAGCTAGAAGCGCTAGAGGCGCGCGCGCTGGCGCTGCACAAGCGGCGCTGTGACTTCGTGGTGCAGCGGCGCCGCGCTGACCTGCGGGACCAGGCGCACGACGTGCTGGCGCCGCCAGGTCGCGCGAAGGTCCCGGAGTGCGAGGACAAGACGCGGCGCGCGGCAGAGCGGGAGGGGCGGCGGCGCGCGCGGCGCCTGCGCAGGGAGGCCGCCGCCGCCGCCGCCGGCGCCGCGCTGCCGCACCTGGACGGGGACTCCGACGACGACGAGCTGCCGCCGCACGAGCTGCACCACCACACGCAGGAGAGGGCGGCCATCCGCTCGGCGTCGAGCCAGGTGTTCGCGGACGCCCTCTCCGCGTGGCGCAGCGTGCGCGGCGTGTGCGCACGCTTGTCTCGATGGCGCGCACGCGCAGCCGAGCTCTACACCGACGCCTACGTGGCCGACTGCCTGCCCAAGCTGCTCGCGCCCTACGTCCGGCACCAGCTTATACTATGGAACCCGATGGCGGATGAAGACAACGAAGATTATGAAAAAATGGATTGGTACAAATGTGTGATGATGTACGGCGTGGCGGCGCCGCACCTCGGCTCGGGCTCCGCGGGCTCCAGCGACACGGACTCGGGCCCCTCCCCCCCCGCGCCCCCCGCGCGCCTGTCCGAGCGGGCCGTGCGCGCCGACCCCGACCTCATGCTAGTGCCCACGCTCGTCGCCAGGGTCGTGCTGCCCAAGCTCACAGAACTGGTGGAGAACGCATGGGACCCTATGTGCGTACGCGCATGCGTGCGGCTGCGGCACCTGCTGCTGCGCGCGGGCGAGCTGCCGGGCTGCGGGGCAGCGCTGCGCCGCCTGGCCGTCGCGCTGCGCTCCCGGCTGGCTGCCGGGCTCGCGGCTGACGTGTTCCTACCTGCACTGCCGCCGCAGGTGATGGAGGGCGCGGGCGGAGTGTTCTGGCGGCGCTGCCTGGGCGCGGGCGTGCGCCTGCTGCGCGCGTCGCTCGCGCTCACCGGCCCGCCCGCGCTGCTGCACGCAGACCCGCTCGTGCTGTCGCTCATCGAGACGTTGTGTTGCGGCGCGGGCGCAGCCGCGGGCCCGGCGGCTGCGCGCGCGGCGTCCGCGCTGGCCGCCAGCCTGCCCCGCGCGGGCCGCCTGCGCCGCGCCGCGCTCGCCCGCCTGGCCGCCCTCGCCGCGCTTGCGCTGTCCAGGCTCGATGGCGACAATCCGCTGCATTTGAAAGGTTTGGAGCAAGCAAGAGCAGTAATAGCCGAAGCAAGAGCGATCGAATGA
- Protein Sequence
- MIIIPYRLEELETERKATSKTQTELRDRLLTSARIRESRAARCGELDAAYRRAQAIRGYLTDLIECLDEKMPQLEALEARALALHKRRCDFVVQRRRADLRDQAHDVLAPPGRAKVPECEDKTRRAAEREGRRRARRLRREAAAAAAGAALPHLDGDSDDDELPPHELHHHTQERAAIRSASSQVFADALSAWRSVRGVCARLSRWRARAAELYTDAYVADCLPKLLAPYVRHQLILWNPMADEDNEDYEKMDWYKCVMMYGVAAPHLGSGSAGSSDTDSGPSPPAPPARLSERAVRADPDLMLVPTLVARVVLPKLTELVENAWDPMCVRACVRLRHLLLRAGELPGCGAALRRLAVALRSRLAAGLAADVFLPALPPQVMEGAGGVFWRRCLGAGVRLLRASLALTGPPALLHADPLVLSLIETLCCGAGAAAGPAAARAASALAASLPRAGRLRRAALARLAALAALALSRLDGDNPLHLKGLEQARAVIAEARAIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01487716;
- 90% Identity
- -
- 80% Identity
- -