Tsar013350.1
Basic Information
- Insect
- Trichomalopsis sarcophagae
- Gene Symbol
- -
- Assembly
- GCA_002249905.1
- Location
- NNAY01000163.1:58322-62153[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0014 0.15 12.4 0.1 1 23 92 114 92 114 0.94 2 18 0.00027 0.029 14.6 1.9 1 23 116 139 116 139 0.93 3 18 0.081 8.7 6.8 3.1 1 23 145 168 145 168 0.91 4 18 7.2e-05 0.0077 16.4 0.4 1 23 174 197 174 197 0.95 5 18 1.4e-05 0.0015 18.7 0.5 2 23 204 226 204 226 0.93 6 18 0.00018 0.019 15.2 0.4 1 23 231 253 231 253 0.97 7 18 5.7e-08 6.1e-06 26.2 0.3 2 23 260 281 260 281 0.97 8 18 7.6e-05 0.0081 16.4 2.9 1 23 287 309 287 309 0.98 9 18 9.9e-08 1.1e-05 25.4 0.5 1 23 315 337 315 337 0.98 10 18 0.00093 0.099 12.9 3.1 1 23 382 405 382 405 0.97 11 18 1.1e-05 0.0012 19.0 0.9 1 23 411 433 411 433 0.97 12 18 2.1e-06 0.00022 21.3 0.6 1 23 441 463 441 463 0.98 13 18 0.022 2.4 8.6 3.2 1 23 469 491 469 491 0.94 14 18 1.5e-06 0.00016 21.7 1.1 1 23 499 522 499 522 0.96 15 18 2.7e-06 0.00029 20.9 0.2 2 23 533 555 532 555 0.94 16 18 3.1e-08 3.3e-06 27.0 0.3 3 23 596 616 595 616 0.98 17 18 1.4e-06 0.00015 21.8 1.5 1 23 622 644 622 644 0.96 18 18 3.7e-05 0.004 17.3 0.1 3 23 652 672 650 672 0.97
Sequence Information
- Coding Sequence
- ATGACGATCAGTAGTATTGCaCCGAATACTGAGCCAACGCTCCGGAGGACGCGCACTAGGACGTCTACGACGCTCAACGCCGATAAATCGCCCACGAGACCTCGAATTCTGAAGCGAACTCCCCGACGAACCGCCAAAATCCGCAGCGACAGCCCAGTTATCTTGCAATCCAAGAGGAAGACAGCGAACAATTCGAAAGGCTTGCGATTACCGCCGAAAAAGCTCAAGCTCGACGATGGCACACAGGGCTCGATCGTCCCGGCAAAGATCGACTTCACCTGCATCAAATGTGGGGAATCTTTCGAAAGCCAAGAAGAGCTTGCGGATCACGGTCAGAACCACGTCTTCCAGTGCGATCATTGCGACCTGAGTTTTCGCCAGCGCAAGATCTTGCGCAAGCACGTGTCCGAGGCGCACAGATCCGTGCCCAAGTACGTCTGCAGCGAGTGCGAAACCGTCTTCAAGTGCAGACAGTCTCTGCGCGAGCATTTCGTCCGCAAGCACACAGAGGGTTTCAGGTTCGCCTGCGAAGCTTGCGGCAAGAAGTTCAAGATGAAGAGCGACCTGTACATGCACGTGCAGAGCATTCACAGCGACGAGCGCGAGGCCGTATGCGACGTTTGCGGCAAGACTTATCGCAACGCCTTCGCCCTGAAGAAGCATCTGGCGCACGCACACAATCAGCGGCCGTTTACCTGCGAGATCTGCAAGCGCAAGCTGGCTACCAAAGAGTCGCTCGAACAACACGCTCAGTTGCACCTTAAGAAGGAGCGGGCCGTGTGCCAAGTCTGCGGTAAAACGTTCAGCGGGAACGACGCGCTGAAAAAGCACATGAGGATACACACTGGCGTCAGACCGTTTCCCTGCAAGGTCTGCGGCAAAGCTTTTAGGAGGCAGAACACCCACAAGCAGCACCTGCTGACCCACACCGGGGTCAGGCCGTACGTTTGCGATATTTGTGGAAAGAGCTTCACCCAGAAGCCTGGCTTGATCACGCACAGAAAGAAGCATCCCGGGCCGCTGCCGCCGTTGCCGGCCATCTCGATCGATTATGTTATCGCGGACCTTATGCAGAAAACCGACGCGAAGAAGGACGACATGGAGGGCGCGCCACCCCCAACTAAGACACCTCGCCATCAGAAGCACAAATGCTCCCTCTGCACCTCCACTTTCGGACAGCTCTCGAATCTCGCTCAGCACCTGCACACGGTCCACAAGGTCGAGCGTCCCTTCGAGTGTCCAGTCTGCAAGTCCAGCTTCCGGAGCGCGAGAAATCTCAGCCGTCACAGCCGACTCCACCAGCCGGACAAGAGCCGCGAGTTCAGCTGCGACCTCTGCGATTACGCGACGAGCCAACGCTCGAACCTGATGGTCCACCTGCGACGTCACTCCAGGAACTACGCGCACCGCTGCGACGTCTGCGGCTGTGGTTTCATGCAGAGGTCCAAGTACCTGGAGCACAAGGCCTTGCACGAGGCCCGACCCGGAGCCACTCACTCCTGTCCCATATGCGAGAGGGTCTTCAACTACAAGAAGAATCTTTTGGCCCATCTGAGGAACCTACACCCGGAGGAGAGCACCGACGCCCCGCTGCTCGAGTGCGAGTACTGCCCTCGAAGCTTTCCCAACGAGCAGAGTCTCAAGAGACACATCAAGGCTTCGCACGCGAAGCTGCTCCAAGAGCCGACGGAGAAGTGCCTCTGTCACACCTGTGGTGCGCAGCTGTCCTGCAAGACTGTTCTGGCACAGCATCTCAGGTCTCACAAGGGCGAGAAGATCGCCGACTGCGACGTCTGCGGGAAGAGCTTCTCCAAGTGGGAGAACCTCAGGGTGCATCAGAGGATACACACCGGAGAACGACCCTATTTGTGCTCGGAATGCGGTAAGGGCTTTATTCAGAGGACCAGCTTGGTTCACCATATGAGGCAgcacgagggagagaagaacTTCGGGTGCGAAGTGTGCGGAAAGGCTTTTGTGGCCGCGTCCAAGCTCAGAAAGCACGCGAAGATCCACGAGAAGAGCTGA
- Protein Sequence
- MTISSIAPNTEPTLRRTRTRTSTTLNADKSPTRPRILKRTPRRTAKIRSDSPVILQSKRKTANNSKGLRLPPKKLKLDDGTQGSIVPAKIDFTCIKCGESFESQEELADHGQNHVFQCDHCDLSFRQRKILRKHVSEAHRSVPKYVCSECETVFKCRQSLREHFVRKHTEGFRFACEACGKKFKMKSDLYMHVQSIHSDEREAVCDVCGKTYRNAFALKKHLAHAHNQRPFTCEICKRKLATKESLEQHAQLHLKKERAVCQVCGKTFSGNDALKKHMRIHTGVRPFPCKVCGKAFRRQNTHKQHLLTHTGVRPYVCDICGKSFTQKPGLITHRKKHPGPLPPLPAISIDYVIADLMQKTDAKKDDMEGAPPPTKTPRHQKHKCSLCTSTFGQLSNLAQHLHTVHKVERPFECPVCKSSFRSARNLSRHSRLHQPDKSREFSCDLCDYATSQRSNLMVHLRRHSRNYAHRCDVCGCGFMQRSKYLEHKALHEARPGATHSCPICERVFNYKKNLLAHLRNLHPEESTDAPLLECEYCPRSFPNEQSLKRHIKASHAKLLQEPTEKCLCHTCGAQLSCKTVLAQHLRSHKGEKIADCDVCGKSFSKWENLRVHQRIHTGERPYLCSECGKGFIQRTSLVHHMRQHEGEKNFGCEVCGKAFVAASKLRKHAKIHEKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01035652; iTF_00287475; iTF_00144032;
- 90% Identity
- iTF_01035652;
- 80% Identity
- -