Ngir011075.1
Basic Information
- Insect
- Nasonia giraulti
- Gene Symbol
- -
- Assembly
- GCA_000004775.1
- Location
- GL276796.1:649255-652515[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0021 0.14 12.4 0.1 1 23 97 119 97 119 0.94 2 18 0.0004 0.026 14.7 1.9 1 23 121 144 121 144 0.93 3 18 0.12 8.3 6.8 3.1 1 23 150 173 150 173 0.91 4 18 0.00011 0.0074 16.4 0.4 1 23 179 202 179 202 0.95 5 18 2.1e-05 0.0014 18.7 0.5 2 23 209 231 209 231 0.93 6 18 0.00027 0.018 15.2 0.4 1 23 236 258 236 258 0.97 7 18 8.7e-08 5.8e-06 26.2 0.3 2 23 265 286 265 286 0.97 8 18 0.00012 0.0078 16.3 2.9 1 23 292 314 292 314 0.98 9 18 1.5e-07 1e-05 25.4 0.5 1 23 320 342 320 342 0.98 10 18 0.0014 0.095 12.9 3.1 1 23 387 410 387 410 0.97 11 18 1.7e-05 0.0012 18.9 0.9 1 23 416 438 416 438 0.97 12 18 1.9e-05 0.0013 18.8 0.6 1 23 446 468 446 468 0.98 13 18 0.034 2.3 8.6 3.2 1 23 474 496 474 496 0.94 14 18 2.3e-06 0.00015 21.7 1.1 1 23 504 527 504 527 0.96 15 18 5.9e-06 0.00039 20.4 0.7 2 23 538 560 537 560 0.95 16 18 4.7e-08 3.1e-06 27.0 0.3 3 23 601 621 600 621 0.98 17 18 2.2e-06 0.00014 21.8 1.5 1 23 627 649 627 649 0.96 18 18 5.7e-05 0.0038 17.3 0.1 3 23 657 677 655 677 0.97
Sequence Information
- Coding Sequence
- ATGAAGCGAGTAGGTGTTTCGCAAAAGCACATAACACCGAATACTGAGCCAACGCTCCGGAGGACGCGCACTAGGACGTCTACGACGCGCAACGCCGATAAATCGCCCACGAGACCTCGAATCCTGAAGCGAACTCCCCGACGAACCGCCAAAATCCGCAGCGCCAGCCCAGTTGTCTTGCAATCCAAGAGGAAGACAGCGAACAACTCGAAAGGCTTGCGACTACCGCCGAAAAAGCTCAAGCTCGACGATAGCACACAGGGCTCGATCGTCCCGGCAAAGATCGACTTTACCTGCATCAAGTGTGGGGAATCTTTCGAAAGCCAAGAAGAGCTTGCGGATCACGGGCAGAACCACGTCTTCCAGTGCGAGCATTGCGACCTGAGTTTTCGCCAGCGCAAGATCTTGCGCAAGCACGTGTCCGAGGCGCACAGATCTGTGCCCAAGTACGTCTGCAGCGAGTGTGAAACCGTCTTCAAGTGCAGACAGTCTCTGCGCGAGCATTTCGTCCGCAAGCACACAGAGGGTTTCAGGTTCGCCTGCGAAGCTTGCGGCAAGAAGTTCAAGATGAAGAGCGACCTGTACATGCACGTGCAGAGCATTCACAGCGACGAGCGCGAGGCCGTATGCGACGTTTGCGGCAAGACTTATCGCAACGCCTTCGCCCTGAAGAAGCATCtggcacacgcacacaatcAGCGGCCGTTTACTTGCGAGATCTGCAAGCGCAAGCTGGCTACTAAAGAGTCGCTCGAACAACACGCTCAATTGCACCTTAAGAAGGAGCGGGCCGTGTGCCAGGTCTGCGGTAAAACGTTCAGCGGGAACGACGCACTGAAAAAGCACATGAGGATACACACTGGCGTCAGACCGTTTCCCTGCAAGGTTTGCGGCAAAGCTTTTAGGAGGCAGAACACCCACAAGCAGCACCTGCTGACTCACACCGGGGTCAGGCCGTACGTTTGCGATATTTGTGGAAAGAGCTTCACCCAGAAGCCTGGTTTGATTACGCACAGAAAGAAGCATCCTGggccgctgccgccgttgcCGGCCATCTCGATCGATTATGTTATCGCGGACCTTATGCAGAAAACCGACGCGAAGAAGGACGACATGGAGGGCGCGCCACCCCCAACAAAGACACCTCGCCATCAGAAGCACAAATGCTCCCTCTGCACCTCCACTTTCGGACAGCTCTCGAATCTCGCCCAGCACCTGCACACGGTCCACAAGCTCGAGCGTCCCTTCGAGTGTCCCGTCTGCAAGTCCAGCTTCCGGAGCGCGAGAAATCTCAGCCGTCACAGCCGACTCCACCAGCCGGACAAGAGCCGCGAGTTCAGCTGCGACCTCTGCGAATACGCGACGAGCCAACGCTCGAACCTGTCGGTCCACCTGCGACGTCACTCCAGGAACTACGCGCACCGCTGCGACGTCTGCGGCTGTGGCTTCATGCAGAGGTCCAAGTACCTGGAGCACAAGGCCTTGCACGAGGCCCGACCCGGAGCCACTCACTCCTGTCCCATATGCGAGAGGGTCTTCAACTACAAGAAGAATCTTCTGGCCCATCTGAGGAACCTACACCCGGAGGAGAGCACCGACGCCCCGCTGGTCGAGTGCGAGCACTGTCCCCGAAGCTTTCCCAACGAGCAGAGTCTCAAGAGACACATCAAGGCTTCGCACGCGAAGCTGCTCCAAGAGCCGACGGAGAAGTGCCTCTGCCACACCTGTGGTGCGCAACTGTCCTGCAAGACTGTTCTGGCTCAGCATCTCAGGTCTCACAAGGGCGAGAAGATCGCCGACTGCGACGTCTGCGGGAAGAGCTTCTCCAAGTGGGAGAACCTCAGGGTGCACCAGAGGATACACACCGGAGAACGGCCCTACTTGTGCTCGGAGTGCGGTAAGGGCTTTATTCAGAGGACCAGCTTGGTCCACCATATGAGGCAgcacgagggagagaagaactTCGGGTGCGAAGTGTGCGGAAAGGCTTTTGTGGCCGCGTCCAAGCTCAGAAAGCACGCAAAGATCCACGAGAAGAGCTGA
- Protein Sequence
- MKRVGVSQKHITPNTEPTLRRTRTRTSTTRNADKSPTRPRILKRTPRRTAKIRSASPVVLQSKRKTANNSKGLRLPPKKLKLDDSTQGSIVPAKIDFTCIKCGESFESQEELADHGQNHVFQCEHCDLSFRQRKILRKHVSEAHRSVPKYVCSECETVFKCRQSLREHFVRKHTEGFRFACEACGKKFKMKSDLYMHVQSIHSDEREAVCDVCGKTYRNAFALKKHLAHAHNQRPFTCEICKRKLATKESLEQHAQLHLKKERAVCQVCGKTFSGNDALKKHMRIHTGVRPFPCKVCGKAFRRQNTHKQHLLTHTGVRPYVCDICGKSFTQKPGLITHRKKHPGPLPPLPAISIDYVIADLMQKTDAKKDDMEGAPPPTKTPRHQKHKCSLCTSTFGQLSNLAQHLHTVHKLERPFECPVCKSSFRSARNLSRHSRLHQPDKSREFSCDLCEYATSQRSNLSVHLRRHSRNYAHRCDVCGCGFMQRSKYLEHKALHEARPGATHSCPICERVFNYKKNLLAHLRNLHPEESTDAPLVECEHCPRSFPNEQSLKRHIKASHAKLLQEPTEKCLCHTCGAQLSCKTVLAQHLRSHKGEKIADCDVCGKSFSKWENLRVHQRIHTGERPYLCSECGKGFIQRTSLVHHMRQHEGEKNFGCEVCGKAFVAASKLRKHAKIHEKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01487232;
- 90% Identity
- iTF_01487232;
- 80% Identity
- -