Csem023880.1
Basic Information
- Insect
- Cecidostiba semifascia
- Gene Symbol
- -
- Assembly
- GCA_900474235.1
- Location
- UCQR01084671.1:8865-12685[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0015 0.15 13.1 0.1 1 23 87 109 87 109 0.94 2 18 1.4e-05 0.0014 19.5 1.4 1 23 111 134 111 134 0.93 3 18 0.85 86 4.4 3.0 1 23 140 163 140 163 0.90 4 18 6e-05 0.0061 17.5 0.4 1 23 169 192 169 192 0.96 5 18 5.4e-05 0.0054 17.6 0.6 2 23 199 221 199 221 0.93 6 18 0.00032 0.032 15.2 0.4 1 23 226 248 226 248 0.97 7 18 1e-07 1e-05 26.2 0.3 2 23 255 276 255 276 0.97 8 18 0.00014 0.014 16.4 2.9 1 23 282 304 282 304 0.98 9 18 1.8e-07 1.8e-05 25.4 0.5 1 23 310 332 310 332 0.98 10 18 0.00024 0.024 15.6 2.2 1 23 377 400 377 400 0.96 11 18 5.8e-06 0.00059 20.7 0.8 1 23 406 428 406 428 0.98 12 18 2.4e-06 0.00024 21.9 0.7 1 23 436 458 436 458 0.98 13 18 0.04 4 8.6 3.2 1 23 464 486 464 486 0.94 14 18 4.9e-06 0.00049 20.9 2.4 1 23 494 517 494 517 0.96 15 18 5.7e-06 0.00057 20.7 1.4 2 23 529 551 528 551 0.96 16 18 5.5e-08 5.5e-06 27.1 0.3 3 23 592 612 591 612 0.98 17 18 2e-06 0.0002 22.1 1.4 1 23 618 640 618 640 0.96 18 18 4.1e-06 0.00041 21.2 0.1 1 23 646 668 646 668 0.98
Sequence Information
- Coding Sequence
- atgcatgtACTGAAGATCGAGCCAACGCTCCGGAGAACGCGCACGAGGACGTCCACTACGCTCATTACCGCGACGCCCACGAAGCCTCGTATCCTGAAGCGAACTCCCCGGCGAACCGTCAAAACCCGAACAGACAGTCCGATCAGCTCGCCGTCCAAAAGAAAATCACCGAGCAGTTTGAAAGGTTTGCGACTGCCGCCGAAAAAGCTCAAGATCGAGGAGGGCAGGCAGACTTCGTCCGTATCGTTAAAGACGGACTTCAGCTGCACCAGGTGCGACGCCACTTTCGAGAGCCAGGAAGAGCTTGCGGATCATGGGCAGGACCATGTCTTCCCGTGCGAGCACTGCGACCTGAGCTTTCGTCAGCGCAAGCTCTTGCGCAAACACGTGTCCGAGGCGCACCAGTCCATGCCTAAATACGTCTGCAGCGAATGCGACAGCATCTTCAAGTGTAGGCAGTCACTGCGCGAACATTTCGTCCGCAAGCACACCGAGGGTTTCAGATTCGTCTGCGAAGCTTGCGGCAAGAAGTTCAAGATGAAGAGCGACCTGTACATGCATGTGCAGAGCATTCACAGCGACGAACGCGAGGCCGTATGCGACGTTTGCGGCAAGAAGTATCGTAACGCCTTCGCCCTGAAGAAGCACCTTGCACACGCCCACAATCAGCGGCCGTTTACCTGTGAGATCTGCAAGCGCAAGCTCGCCACGAAGGAGTCACTCGAGCAGCACGCCCAATTGCATCTGAAGAAAGAGCGAGCGGTGTGCCAAGTCTGCGGTAAAACATTCAGTGGGAACGACGCGTTAAAGAAGCACATGAGGATACACACCGGTGTCAGGCCGTTTCCCTGCAAGGTCTGTGGTAAAGCTTTTAGGAGGCAGAACACGCATAAGCAACACTTGTTGACCCACACCGGGGTCAGGCCGTATGTCTGCGATATTTGTGGGAAAAGCTTTACCCAGAAACCGGGTTTGATTACGCACAGGAAGAAGCATCCCGGGCCGTTGCCGCCATTGCCGGCCATCTCGATCGATTATGTCATCGCGGATCTGATGCAGAAGACCGACGCGAGGAAGGAAGATATGGAGGGCGTGTCAACCCCGACCAAGACATCTCGCCACCAGAAGCACAGCTGTCCTCTCTGCACTTTCACTTTTGGTCAGCTCTCGAATCTCGCCCAGCACCTGCACACCGTCCACAAGCTCGAGCGTCCCTTCGAGTGTCCCATCTGCAAGTCCACCTTCCGCAGCGCGAGAAACCTTAGCCGTCACAGCCGAGTTCACCAGCCGGACAAGAGCCGTCAGTTCAGCTGCGACCTCTGCGACTACGCGACGAGCCAACGCTCGAACCTAACTGTCCACCTGCGACGTCACTCTAGGAACTACGCGCACCGCTGCGACGTCTGCGGTTGCGGCTTCATGCAGAGGTCCAAGTACCTAGAGCACAAGGCCCTCCACGAGGCTCGACCTGGAGCCACTCACTCCTGTTCCATATGCCAGAAGGTCTTCAACTACAAGAAGAATCTTCTGGCCCATCTGAGAAACTTACACCCGGAGGAGCTGAGCACCAACGGCCCGCTGCTCGAGTGCGAGCACTGTCCTCGAAGCTTTCCCAACGAGCAGAGTCTCAAGAGACACCTCAAGTCTTCGCACTCGAAGCTACTCCAGGAGCCGACGGAAAAGTGTCTCTGTCATACCTGTGGTGCACAGCTGTCCTGCAAGACTGTTCTGGCACAGCATCTCAGATCGCACAAGGGTGAGAAGATAGCCGACTGTGACGTCTGCGGCAAGAGCTTCTCCAAGTGGGAGAATCTGAGGGTGCACCAGAGAATACACACCGGAGAACGACCGTATTTGTGCTCGGAGTGTGGTAAGGGATTTGTTCAGAGGACCAGTTTGGTCCATCATATGAGACAGCACGAAGGAGAGAAGAACTTCAGGTGCGAAGTGTGCGGAAAGGCTTTTGTAGCTGCGTCCAAGCTGAGGAAGCACGCGAAGATCCACGAGAAGAGTTGA
- Protein Sequence
- MHVLKIEPTLRRTRTRTSTTLITATPTKPRILKRTPRRTVKTRTDSPISSPSKRKSPSSLKGLRLPPKKLKIEEGRQTSSVSLKTDFSCTRCDATFESQEELADHGQDHVFPCEHCDLSFRQRKLLRKHVSEAHQSMPKYVCSECDSIFKCRQSLREHFVRKHTEGFRFVCEACGKKFKMKSDLYMHVQSIHSDEREAVCDVCGKKYRNAFALKKHLAHAHNQRPFTCEICKRKLATKESLEQHAQLHLKKERAVCQVCGKTFSGNDALKKHMRIHTGVRPFPCKVCGKAFRRQNTHKQHLLTHTGVRPYVCDICGKSFTQKPGLITHRKKHPGPLPPLPAISIDYVIADLMQKTDARKEDMEGVSTPTKTSRHQKHSCPLCTFTFGQLSNLAQHLHTVHKLERPFECPICKSTFRSARNLSRHSRVHQPDKSRQFSCDLCDYATSQRSNLTVHLRRHSRNYAHRCDVCGCGFMQRSKYLEHKALHEARPGATHSCSICQKVFNYKKNLLAHLRNLHPEELSTNGPLLECEHCPRSFPNEQSLKRHLKSSHSKLLQEPTEKCLCHTCGAQLSCKTVLAQHLRSHKGEKIADCDVCGKSFSKWENLRVHQRIHTGERPYLCSECGKGFVQRTSLVHHMRQHEGEKNFRCEVCGKAFVAASKLRKHAKIHEKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01487232;
- 90% Identity
- -
- 80% Identity
- -