Abak004186.1
Basic Information
- Insect
- Apocrypta bakeri
- Gene Symbol
- -
- Assembly
- GCA_018906985.1
- Location
- JACCIA010000001.1:17581556-17585274[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.004 0.28 11.5 3.0 1 21 92 112 92 114 0.93 2 18 6.9e-06 0.0005 20.2 2.2 1 23 116 139 116 139 0.93 3 18 0.48 35 4.9 3.0 1 23 145 168 145 168 0.90 4 18 0.00011 0.0077 16.4 0.4 1 23 174 197 174 197 0.95 5 18 2e-05 0.0015 18.7 0.5 2 23 204 226 204 226 0.93 6 18 0.00075 0.054 13.8 0.2 1 23 231 253 231 253 0.96 7 18 8.5e-08 6.1e-06 26.2 0.3 2 23 260 281 260 281 0.97 8 18 0.00011 0.0082 16.4 2.9 1 23 287 309 287 309 0.98 9 18 1.5e-07 1.1e-05 25.4 0.5 1 23 315 337 315 337 0.98 10 18 0.015 1.1 9.7 4.7 1 23 384 407 384 407 0.96 11 18 2.9e-05 0.0021 18.2 2.8 1 23 413 435 413 435 0.98 12 18 4.5e-06 0.00032 20.8 0.8 1 23 443 465 443 465 0.98 13 18 0.038 2.7 8.4 3.3 1 23 471 493 471 493 0.94 14 18 1.8e-06 0.00013 22.0 1.2 1 23 501 524 501 524 0.96 15 18 1e-05 0.00073 19.7 1.2 2 23 535 557 534 557 0.96 16 18 4.6e-08 3.3e-06 27.0 0.3 3 23 598 618 597 618 0.98 17 18 1e-05 0.00075 19.6 1.0 1 23 624 646 624 646 0.96 18 18 2.4e-06 0.00017 21.6 0.1 1 23 652 674 652 674 0.98
Sequence Information
- Coding Sequence
- ATGCATTACAAAGAGTTATTTAAACTGAAAACTGAGTCGCCGCTTCGGCGAACGAGAACCAGGACGTCTACAACCATCGACTCCGCAACACCCACGAAGCCTCGAATCCTGAAGAGATCACCAAGACGAACCGCAAAAGCTCGTGCCAAGAGCCCAACGGCCTCAGGATCGAAAAGGAAATCGCCGAGCAATTTGAAAGGCTTGCGATTACCGCCAAAAAAGCTCAAAATCGATGAGGATGCACAGACCTCTTCCGCCCAAATAAAGGTCGAATTCAGCTGTTACAAATGTGAAACTGCTTTCGAGACCCAAAGCGAGCTTACGGAGCACTCGAGGTGTCATGTCTTTCAATGCGAGCACTGTGACCTGAGCTTTCGTCAGCGAAAGCTCTTGCGCAAACACGTGTCCGAAGCGCACAAATCCGTACCCAAGTACGTCTGCAACGAGTGCGATAGCATTTTCAAGTGCAGACAGTCGCTTCGCGAACACTTCGTCCGCAAGCACACCGAGGGTTTCAGGTTCGCCTGCGAAGCTTGCGGCAAGAAATTTAAGATGAAGAGCGACCTGTACATGCACGTGCAGAGTATTCACAGCGACGAACGAGAAGCTGTATGCGACGTTTGCGGCAAGACCTATCGCAATGCCTTTGCTCTGAAGAAGCATCTGGCTCATGCCCATAATCAGCGACCATTCGCCTGTGAGATCTGCAAGCGCAAGCTCGCCACGAAGGAATCGCTCGAGCAGCACGCGCAATTACACCTGAGGAAGGAGCGAGCCGTGTGTCAGGTCTGCGGCAAAACATTCAGCGGTAACGATGCGTTGAAAAAACACATGAGGATACACACTGGCGTCAGACCGTTCCCCTGCAAAGTTTGTGGCAAAGCTTTCAGGAGACAGAACACGCACAAACAGCACTTGCTGACGCATACGGGAGTCAGGCCCTATGTTTGCGACATTTGCGGAAAGAGCTTTACGCAGAAGCCAGGATTGATTACGCACAGGAAGAAGCATCCGGGACCGTTGCCACCGCTTCCTGCCATATCGATCGATTATGTTATCGCGGATCTCATGCAGAAGACAGATTTGAAGAAGGATGATCTGGAAACTACGCAATCATCAGAAGCATCGAAACGCCCTCGCGATCAGAAACACAACTGCCACCTTTGCAGCTCTACCTTCGGCCAGATGTCAAATCTCGCAAATCATCTGCACACTGTGCACAAGCTCGAGCGTCCTTTCGAATGTCCCACGTGCAATTCGTGCTTCCGTAGCGCTCGAAACCTCAGCCGTCACAGTCGAATCCACCAGCCGAATAAAAATCGTCAATTCAGCTGCGACCTATGCGACTACGCAACGAACCAACGCTCGAACTTGACAGTTCACTTGAGACGTCATTCCAGGAACTACGCGCACTACTGCGACGTTTGCGGCTGCGGCTTCATGCAGAAGTCCAAATACCTCGAGCACAAAGCTCTCCACGAAGCTGGACCTGGGGCCACTCATTCCTGTCCCGTATGTGAGAAGGTTTTCAACTACAAAAAGAATCTGCTGGCTCATTTGAGAAACTTGCATCCGGAAGAGAGCACCGACGCTCTGCTCCTGGAGTGCGAGCACTGTCCACGAAGCTTTCCAAATGATCAGAGTCTCAAACGACATATCAAGTCATCGCATTCGAAACTGCTCGAGGAGACTACAGAAAAATGCCTCTGTCATACCTGTGGTGCACAACTGTCTTGTAAAACTGTTCTGGCTCAGCATCTAAGATCGCACAGAGGTGAGAAAATCGCCGACTGCGACGTATGTGGGAAGAGCTTCTCTAAGTGGGAGAACCTCAGGGTACATCAGAGGATACACACTGGAGAACGTCCGTATTTATGTTCGGAGTGTGGTATGGGATTCGTTCAGAGGACTAGTTTGGTTCACCACATGAGACAACACGAGGGTGAGAAGAACTTCAAGTGCGACGTTTGCGGAAAGGCTTTCGTAGCTGCTTCCAAGCTGAGGAAACACGCGAAGATACACGAGAAGACTTGA
- Protein Sequence
- MHYKELFKLKTESPLRRTRTRTSTTIDSATPTKPRILKRSPRRTAKARAKSPTASGSKRKSPSNLKGLRLPPKKLKIDEDAQTSSAQIKVEFSCYKCETAFETQSELTEHSRCHVFQCEHCDLSFRQRKLLRKHVSEAHKSVPKYVCNECDSIFKCRQSLREHFVRKHTEGFRFACEACGKKFKMKSDLYMHVQSIHSDEREAVCDVCGKTYRNAFALKKHLAHAHNQRPFACEICKRKLATKESLEQHAQLHLRKERAVCQVCGKTFSGNDALKKHMRIHTGVRPFPCKVCGKAFRRQNTHKQHLLTHTGVRPYVCDICGKSFTQKPGLITHRKKHPGPLPPLPAISIDYVIADLMQKTDLKKDDLETTQSSEASKRPRDQKHNCHLCSSTFGQMSNLANHLHTVHKLERPFECPTCNSCFRSARNLSRHSRIHQPNKNRQFSCDLCDYATNQRSNLTVHLRRHSRNYAHYCDVCGCGFMQKSKYLEHKALHEAGPGATHSCPVCEKVFNYKKNLLAHLRNLHPEESTDALLLECEHCPRSFPNDQSLKRHIKSSHSKLLEETTEKCLCHTCGAQLSCKTVLAQHLRSHRGEKIADCDVCGKSFSKWENLRVHQRIHTGERPYLCSECGMGFVQRTSLVHHMRQHEGEKNFKCDVCGKAFVAASKLRKHAKIHEKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01487232;
- 90% Identity
- -
- 80% Identity
- -