Tpra036246.2
Basic Information
- Insect
- Tricholauxania praeusta
- Gene Symbol
- lrrfip2
- Assembly
- GCA_949775025.1
- Location
- OX459031.1:101996856-102013895[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.33 2.9e+03 -1.5 3.5 35 75 109 155 94 173 0.47 2 3 4.6e-102 4e-98 329.7 37.2 1 299 234 522 234 523 0.90 3 3 0.64 5.7e+03 -2.4 5.8 1 36 548 586 524 594 0.61
Sequence Information
- Coding Sequence
- ATGAATCTCAGTGGTGCTCTTGGACGTCGTCGTAGTGCCGGTTCACGTGTTAATGCTGAAGCTCTAGCTTTGGATCTAATCGCTAAAGAGAAGTGCgatttaatttcaattgatgACAAAATGTCTGAAGAGATCATTAATCAAACTAAAGCTATGAAAAGGGAAACCAATAACAATGTAAACAAAGAAGACACTTTAACATATGGATCGTCGTCGGAGCATACAGATACTATGGATTATGATGAAATCGGTAAAGAATGTGACTTTAGTGATAATGATTCGCAAgaagaaaatgaaatatttaaagacTGCGACAATGGTGCTCGACAGAATTCGAATGCTGATAACAACGACAACGACAGTGACCGGTTAACGGttgcaacaactacaacagctACTACCAATACCGCAACAACAGCCACTACTACAACTGTAATAGGGTGTTCTAACAATTCAGAAGATACTGAGAGAGGAACCCGTCTATCAGCAGATAATCACGGCCTACCTGTTGAAAAAACCTCAGATGACGTAATTGTGGAAAGAGTTAGCAAAACAGAGAAGAAAAGTAAAACCAACAATGGGAGCAATAGTGAGCACCCTCCAGCTACTATTGATACAgaagacgatgatgatgattacTATAGTGATGAACCAGAAGATGAAATGATTGTACAATTTTTGGGAGAAGCAAATCGAATTGCTGAAGCTCGCTTGACGGCTCGCAGGCAAGCACGTACGGAAGCACGCGAAATCCGTATGAAAGAATTGGAAAGACAACAGAAGGATCAAGATCATAATGCAGATCGAGACTTTGATATGCAAACTACGCCTGCTCTGGATCCGTTATCACGTGTTGGCAATGCCAATGTCAATGGATTACTGAattctggaaaaaataattcaatgtcATCACAGCGTAGCAGTGTAGACTCCTTGGAAGATGAAGGACGCAGTTGTGTACGTGATAACAAACAGGAACTGAAGGATGCAGAGGAGCGATTTCGCAAAGCCATGATTGCCAACGCTCAGTTGGATAATGAACGTGCATCACAAACTTATCAAATTCAACATTTGAAGGACCAACTAGAGGAGATTGAAGAACTTAACGCGCAGTTACAGCGTGAAATTAAAGATAAGACACGTGATTGTAATGCCTTTAAGCGCAATTTGGATAAAGTCACCGAAGAATTGAAACTGGTACAAGGGCAATTAAATGAACGCGACGCATTAATAGTAGACCAAGGTTTGGTCATAGTAGCTGTAGAGAATGATGATGGTTCTGATGCCAAGCGCGCACTTATAACTACAGAAAATGCACAGCTTTTAAGTTCGGTCCAAGGTTCTTTAGatGTTCGACTTAAGAGATTCAACGAAGAAAAGCAACAGCTCAAAGATGAAATTCAACTCCTTAAACAACAACTTGAAAGCTACAAGTCTAAAAATAAtgaacaaaataacaacaaagttAGCGAACAACTCGATGAAGAGACTGAAGCTCAAAGAGAAGCCAATAAGATTATATGTGATTATAAATTTAGATTACAAAAAGCTGAACAAGATATTTCTAGTCTCCAAGCCAGCTTAGCTCGCTCGGAAACACAACTAGTTCGTTATAAAACTGCCGTTGAGGCTGCTGAGAAAGCTGAAGCTGAATTGAAAGGTGATAAGCGAAAACTTCAACGAGAGAATCGAGAAATCGCCGAACGTTTGGAAGAACAGGAAACAGCAAACAAACATCTAATAAAAAgactggacaaaataaaaaatgcaaaaagtgCACTACTTAAAGATTTATAA
- Protein Sequence
- MNLSGALGRRRSAGSRVNAEALALDLIAKEKCDLISIDDKMSEEIINQTKAMKRETNNNVNKEDTLTYGSSSEHTDTMDYDEIGKECDFSDNDSQEENEIFKDCDNGARQNSNADNNDNDSDRLTVATTTTATTNTATTATTTTVIGCSNNSEDTERGTRLSADNHGLPVEKTSDDVIVERVSKTEKKSKTNNGSNSEHPPATIDTEDDDDDYYSDEPEDEMIVQFLGEANRIAEARLTARRQARTEAREIRMKELERQQKDQDHNADRDFDMQTTPALDPLSRVGNANVNGLLNSGKNNSMSSQRSSVDSLEDEGRSCVRDNKQELKDAEERFRKAMIANAQLDNERASQTYQIQHLKDQLEEIEELNAQLQREIKDKTRDCNAFKRNLDKVTEELKLVQGQLNERDALIVDQGLVIVAVENDDGSDAKRALITTENAQLLSSVQGSLDVRLKRFNEEKQQLKDEIQLLKQQLESYKSKNNEQNNNKVSEQLDEETEAQREANKIICDYKFRLQKAEQDISSLQASLARSETQLVRYKTAVEAAEKAEAELKGDKRKLQRENREIAERLEEQETANKHLIKRLDKIKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00257823;
- 90% Identity
- iTF_00972194;
- 80% Identity
- -