Basic Information

Insect: Meiosimyza platycephala
Gene Symbol: lrrfip2
Assembly: GCA_963662105.1
Location: OY759211.1:76605214-76620903[+]

Transcription Factor Domain

TF Family: LRRFIP
Domain: LRRFIP domain
PFAM: PF09738
TF Group: Unclassified Structure
Description: LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 0.48 3.9e+03 -2.3 4.1 33 75 118 158 96 198 0.49

2 3 7.9e-101 6.3e-97 325.3 36.8 1 299 237 525 237 526 0.90

3 3 0.52 4.1e+03 -2.4 5.8 1 36 551 589 527 597 0.61

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	0.48	3.9e+03	-2.3	4.1	33	75	118	158	96	198	0.49
2	3	7.9e-101	6.3e-97	325.3	36.8	1	299	237	525	237	526	0.90
3	3	0.52	4.1e+03	-2.4	5.8	1	36	551	589	527	597	0.61

Sequence Information

Coding Sequence: ATGAATCTCAGTGGTGCTTTTGGACGTCGTCGTAGTGCCGGTTCTCGTGTTAATGCTGAAGCTCTAGCTTTGGATCTAATCGCTAAAGAGAAGTGCGATTTGATTTCAATTGATGACAAAATGTCTGAAAAGATCATTAATCAAGCTGCTAAAGTTATGAAAAGAGAAACCAATAACAATGTAAACAAAGATGATACTTTAACATATGGATCGACGTCGGACCATAAAGATACTATGGATTATGATGAAATCGGTAAAGAATGTGACTTTAGTGATAATGATTCGCaagaagaaaatgaaatatttaaagactGCGACAATGGTGCTCGGCAGAATTCGAATGCTGataacaacgacaacgacaGTGACCGGTTAACGGttgcaacaactacaacagctACTGCTACTACCAATACCGCAACAAAAGCCACTACTACAACTTTAATAGGGTATTCTAACAATTCAGAAGATACTGAGAGAGAAACCCGTCTATCAGCAGATAATCACAGCGTACCTGTTGAAAAAACCTCAGATGACGTAATTGTGGAAAGAGTTAGCAAAAcagaaaagaaaactaaaaccAACAATGTGAGCACTAGCGAGCACCCTCCAGCTACTATTGATACAgaagacgatgatgatgattacTATAGTGAAGAACCAGAAGATGAAATGATTGTACAATTTTTGGGAGAAGCAAATCGAATTgCTGAAGCACGCTTGACAGCTCGCAGGCAGGCACGTACGGAAGCACGCGAAATCCGTATGAAAGAATTGGAAAGACAACAGAAGGATCAAGATCATAATGCAGATCGAGACTTTGATATGCACACCACGCCTGCTCTGGATCCGTTATCACGTGTTGGCAATGCCACTGTCAATGGATTACTGAattctggaaaaaataattcaatgtcATCACAGCGTAGCAGTGTAGACTCTTTGGAAGATGAAGGACGCAGTTACCTACGTGATAACAAACAGGAACTAAAGGATGCTGAGGAGCGATTTCGCAAAGCGATGATTGCCAATGCTCAGTTGGATAATGAACGTGCATCACAATCTTATCAAATTCAACATTTGAAGGACCAACTAGAGGAGATTGAAGAACTTAACGCGCAGTTACAGCGTGAAATTAAAGATAAAACACGTGACTGTAATGCCTTTAAACGGAATTTGGATAAAGTCAACGAAGAATTAAAACTGGTACATGGACAACTAAATGAACGCGACGCATTAATAGTAAATCAAGGTTTAGTCATAGTAGCTGTAGAGAATGATGATGGTTCAGATGCCAAGCGCGCACTTATATCAACCGAAAATGCACAGCTTTTAAGTTCGGTCCAAGGCTCTTTAGATGTTAGACTTAAGAGATTCAACGAAGAAAAGCAACAGCTGAAAGATGAAATTCAACGCCTTAAACAACAACTTGAAAGCCACAAGTCTATaaataatgaacaaaataacaacaaagttaGCGAACAACTCGATGAAGAGACTGAAGCTCAAAGAGAAGCCAATAAGATTATATGTGATTATAAATTTAGATTACAAAAAGCTGAACAAGATATTTCTAGTCTCCAAGCTAGCTTAGCTCGTTCGGAAACACAACTAGTTCGTTATAAAACTGCCGTTGAGGCTGCTGAGAAAGCTGAAGCTGAACTGAAAGGTGATAAACGAAAACTTCAACGAGAGAATCGAGAAATCGCCGAACGTTTGGAAGAACAGGAAACAGCAAATAAACATCTAATAAAAAGACtggacaaaataaaaaatgcaaaaagtgcACTACTTAAGgatttataa
Protein Sequence: MNLSGAFGRRRSAGSRVNAEALALDLIAKEKCDLISIDDKMSEKIINQAAKVMKRETNNNVNKDDTLTYGSTSDHKDTMDYDEIGKECDFSDNDSQEENEIFKDCDNGARQNSNADNNDNDSDRLTVATTTTATATTNTATKATTTTLIGYSNNSEDTERETRLSADNHSVPVEKTSDDVIVERVSKTEKKTKTNNVSTSEHPPATIDTEDDDDDYYSEEPEDEMIVQFLGEANRIAEARLTARRQARTEAREIRMKELERQQKDQDHNADRDFDMHTTPALDPLSRVGNATVNGLLNSGKNNSMSSQRSSVDSLEDEGRSYLRDNKQELKDAEERFRKAMIANAQLDNERASQSYQIQHLKDQLEEIEELNAQLQREIKDKTRDCNAFKRNLDKVNEELKLVHGQLNERDALIVNQGLVIVAVENDDGSDAKRALISTENAQLLSSVQGSLDVRLKRFNEEKQQLKDEIQRLKQQLESHKSINNEQNNNKVSEQLDEETEAQREANKIICDYKFRLQKAEQDISSLQASLARSETQLVRYKTAVEAAEKAEAELKGDKRKLQRENREIAERLEEQETANKHLIKRLDKIKNAKSALLKDL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00257823;
90% Identity: iTF_01486176;
80% Identity: -