Csim022226.1
Basic Information
- Insect
- Calliopum simillimum
- Gene Symbol
- lrrfip2
- Assembly
- GCA_951812925.1
- Location
- OX638370.1:22360416-22370212[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.45 6.6e+03 -2.6 3.1 30 90 89 128 52 146 0.46 2 4 0.61 9e+03 -3.1 0.1 31 61 156 186 155 191 0.70 3 4 9.8e-102 1.4e-97 327.9 37.6 1 299 224 513 224 514 0.91 4 4 0.27 4e+03 -1.9 5.0 2 37 540 578 525 587 0.69
Sequence Information
- Coding Sequence
- ATGTCTGAAGAGATCATTAATCAATCTACTGCTATGAAAAGGGAAACCAATAACAATGTAAACAAAGAAGATACTTTAGCATATGGATCATCCTCAACGGATCGTAGAAATACGACGAGTTCACTGGGGTATGATGAAATCGGTGAAGAATTTGACTTTAGTGATAAAGATTCAGAGGAAGACgaagaaaatgaaacatttcaAGACTGCGACGACAATGGTAGTACGAGTATTCGGCGGAATTTAAATGCTGATAACAACGACAACGAAAACGACTGTGACCGGTTAACGGTTGCAACAactacaacaccaacaacagctACTGCTACTACTAACACCGCAACAACAGGCACTACTACAACTGCAGTAGAAGAATGTTCTAACAACCTAAAAGATACTGAGAGAGTAACACGTCGTCTACGAGCTACGGCTAATCACAGCAGCAGCGGCGGCATACCTGTTGTTGAAAATACTGCAGATGACGTAATTGTGGAAAGAGTTAGCAAAACAGAGAAGaaaagtaaaacaacaaaaaatgagaGCGCAGCGACGGCGGCGAGTGGACTCCCTCCAGCTACTATTGATAcagaagatgatgatgatgattactATAGTGATGAACCAGAAGATGAATTGATTGTACAATTTTTGGGAGAAGCAAATCGAATTGCTGAAGCCCGCTTGACGGCTCGCAGACAGGCACGTGCGGAGGCACGCGAAATACGTATGAAAGAATTGGAAAGACAACAGAAAGATCAAGATCATAATGCCGACCGAGACTTTGATATGCAAACCACGACTCCTTTGGACCCGTTACGTGCACGTGTTGGCAATGTCAATACTAATGGTGTATTAAACTCTGCAAGAAATAGTTCAATGTCATCCCAGCGTAGCAGTGAAGACTCTTTGGAGGAAGAAGGACGAAATTATTCACGCGATAACAGACAAGAACTGAAGGAAGCAGAGGAGCGATTCCGCAAAGCGATGATTGCTAATGCTCAGCTGGATAATGAACGTGCATCACAAACttatcaaattcaaaatttaaaagatcAACTAGAGGAAATTGAAGAATTTAATGCGCAATTGCAGCGTGAAATCAAAGATAGAACACGTGATTGTAATGCGTTCAAACGAAATTTGGATAAAGTTAATGAAGAATTGAAATTGGTGCGAGGACAATTAAATGAACGCGATGCATTAATAGCAGATCAAGGCTTGGTCATTGTGTCTGTAGAGAATGATGATGGTACTGATGCGAGTCGCACACTTATCACTGCTGAAAATGCACAACTATTAAGTTCGGTACAAGGTTCCTTAGACATTCGACTGAAAAGATTCAccgaagaaaaacaacaactaaaagATGAAATTCAACACTTTAAGGAACTGCTTGAAAGTTACAAGtctaaaaataatgaacaaaataataacaaagtgAGTGAACAACCCGATGAAGAGACTGAAGCTCAAAGAGAAGCAAATAAGATTATATGTGATTATAAATATAGATTACAGAAagctgagcaagatatttctaGTCTCCAAGCCAGCCTAGCTCGTTCGGAAACACAATTAGTTCGTTATAAAAGTGCTGTAGAGGCTGCCGAGACCGCAGAAGCTGAGTTAAAAGGTGACAAACGCAAGCTTCAACGCGAGAATCGAGAGATCACCGAACGTTTGGAAGAACAGGAAACAGCAAATAAACATCTGATGAAAAGGctggacaaaataaaaaatgcaaagagTGCACTTCTTAAGGATCTATAA
- Protein Sequence
- MSEEIINQSTAMKRETNNNVNKEDTLAYGSSSTDRRNTTSSLGYDEIGEEFDFSDKDSEEDEENETFQDCDDNGSTSIRRNLNADNNDNENDCDRLTVATTTTPTTATATTNTATTGTTTTAVEECSNNLKDTERVTRRLRATANHSSSGGIPVVENTADDVIVERVSKTEKKSKTTKNESAATAASGLPPATIDTEDDDDDYYSDEPEDELIVQFLGEANRIAEARLTARRQARAEAREIRMKELERQQKDQDHNADRDFDMQTTTPLDPLRARVGNVNTNGVLNSARNSSMSSQRSSEDSLEEEGRNYSRDNRQELKEAEERFRKAMIANAQLDNERASQTYQIQNLKDQLEEIEEFNAQLQREIKDRTRDCNAFKRNLDKVNEELKLVRGQLNERDALIADQGLVIVSVENDDGTDASRTLITAENAQLLSSVQGSLDIRLKRFTEEKQQLKDEIQHFKELLESYKSKNNEQNNNKVSEQPDEETEAQREANKIICDYKYRLQKAEQDISSLQASLARSETQLVRYKSAVEAAETAEAELKGDKRKLQRENREITERLEEQETANKHLMKRLDKIKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01486176; iTF_00972194;
- 90% Identity
- -
- 80% Identity
- -