Tpre012243.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_000599845.3
- Location
- NW:1985134-1990186[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.2e-111 2.7e-107 358.0 35.1 1 300 65 362 65 362 0.96 2 3 0.0011 13 4.4 3.2 120 171 360 411 359 418 0.93 3 3 0.046 5.7e+02 -1.0 6.1 198 236 395 434 373 437 0.46
Sequence Information
- Coding Sequence
- ATGActagtctctctttctctctctcgctctctgacTCTTTGGCACattgcttatatatacatacttacCTGTTTGCCTTGCTCTCGCGAGTTTCGCGGTCAGTCGCTATTGATAAGGcaatcgttgaattttttcactctatAAAACTATTCGTACAGGCCGTAGACTCTGCAGATTTATTTCAAAGAGCTGCAGAAGCAAGACTTGCTGCTAGACGACAAGCTCGAGCAGAGGCTAGAGAAATACGCATGAGAGAATTGGAAAGACAGcaaaaagaagcagaagaaaatGCAGACAAGGCTTTTGAAATGGGTGGAGCTGATGCAACCAGAATTATAAGGGTAACTCCAGATCCTGTCCGTGCTGCTCGTCTTTTGactaattcaaataatttccAATCCAGTCGTAGATCTTCTGAAGATTCATTAGAGGACGCAGGTCTTGGGAGAGATCTACGGACCGAATTAAAagaaacagaagaaaaatttcgcaaAGCAATGATTGCTAACGCTCAATTAGACAATGAAAAGTCTTCCTATGCATATCAAGTTGATTTGCTTAAAGATAAATTGGAAGAACTAGAGGAATCTATTGCTCAACTTCGACGTGAGCTTCGAGACAAAAATCGTGAAGCAGAACAATTTAAGCGTCTCAGTCAAAAAACTAAAGAAGATTTAGAAATTTGTAGGGCTCAACTGTTAGAAAGGGACACCttaattgaagaaaatggTTTAGTCATTGTTGATGATGAAAGTGACGAAAATGAAGAGTCTACAAAAGAAAATGGACCAGTTTGTAGAAGAAGAGTGCTAGTCAGTACAGAAGCCGCAGAATTGTTACAAAATGCGGGTGAAGGTTCATTAGatgtTCGACTGCGAAAGTTTGCATCAGATAAGAAAGAAATGCAAGATGAAATTCGACATCTTAGGCTAGAACTAGAAGAagcaaaacataaaataagAACAGAACGAAATTCTGGCTCAGTTATAGGTCTGTCTGACTCTGATGATATTCAAAGGGAAACAAATAAACTGTTATCAGATTGCAAATTCAAATTGCAAAAAGCTGAACAGGATGTATCAACTCTTCAAGCGAATGTTGCTAGATTGGAAAGCCAAGTTATACGATATAAATCTGCAGCTGAAGCGTCTGAAAAAGCTGAAGATGAAttgaaagtagaaaaaagaaaattgcaaCGAGAAgTCAGAGAATCCCAGGCTCGTGTGGAAGAACTAGAAACTTCCAATTCACACTTGCAGCGTCGTTTAGATAAACTAAAAAACGCCAAATCGGCTCTGCTTAAAGAGCTTTGA
- Protein Sequence
- MTSLSFSLSLSDSLAHCLYIHTYLFALLSRVSRSVAIDKAIVEFFHSIKLFVQAVDSADLFQRAAEARLAARRQARAEAREIRMRELERQQKEAEENADKAFEMGGADATRIIRVTPDPVRAARLLTNSNNFQSSRRSSEDSLEDAGLGRDLRTELKETEEKFRKAMIANAQLDNEKSSYAYQVDLLKDKLEELEESIAQLRRELRDKNREAEQFKRLSQKTKEDLEICRAQLLERDTLIEENGLVIVDDESDENEESTKENGPVCRRRVLVSTEAAELLQNAGEGSLDVRLRKFASDKKEMQDEIRHLRLELEEAKHKIRTERNSGSVIGLSDSDDIQRETNKLLSDCKFKLQKAEQDVSTLQANVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREVRESQARVEELETSNSHLQRRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_01483864; iTF_01481563; iTF_01482395;
- 80% Identity
- -