Tden011751.1
Basic Information
- Insect
- Trichogramma dendrolimi
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_034770305.1
- Location
- JAPMIB010000042.1:307174-309011[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.1e-111 6.5e-107 358.1 34.9 1 300 29 326 29 326 0.95 2 3 0.0015 45 4.0 3.7 120 171 324 375 323 378 0.93 3 3 0.05 1.6e+03 -1.1 6.3 198 236 359 398 339 401 0.45
Sequence Information
- Coding Sequence
- atggAAGCATCTGTGGCAGGTAGGCGGCGTGCTGCCACCAAGAGTTCTGCTGAAGATCAAGCTTTAGATCAAATCGCCAAAGAGGCAGAAGCAAGACTTGCTGCTAGACGACAAGCTCGAGCAGAGGCTAGAGAAATACGCATGAGAGAATTGGAAAGACAGCaaaaagaagcagaagaaaatGCAGACAAGGCTTTTGAAATGGGTGGAGCTGACGCAACCAGAATTATAAGGGTAACTCCAGATCCTGTCCGTGCTGCTCGTCTTTTaactaattcaaataattttcaatccaGTCGTAGATCTTCTGAAGATTCATTAGAGGACGCAGGTCTTGGGAGAGATCTACGGACCGAATTAAAAGaaacagaagaaaaatttcgcaaagCAATGATTGCCAACGCTCAATTAGACAACGAAAAGTCTTCCTATGCATATCAAGTTGATTTGCTTAAAGATAAATTGGAAGAACTAGAGGAATCTATTGCTCAACTTCGACGTGAGCTTCGAGACAAAAATCGTGAAGCAGAACAATTTAAGCGTCTCAGTCAAAAAACTAAAGAAGATTTAGAAATTTGTAGGGCTCAACTGTTAGAAAGGGACACTCTAATTGAAGAAAATGGTTTAGTCATTGTTGATGATGAAAGTGACGAAAATGAAGAGTCTACAAAAGAAAATGGACCAATTTGTAGAAGAAGAGTGCTAGTCAGTACAGAAGCCGCAGAATTGTTACAAAATGCGGGTGAAGGTTCATTAGatgTTCGACTGCGAAAGTTTGCATCAGATAAGAAAGAAATGCAAGATGAAATTCGACATCTCAGGCTAGAACTAGAAGAAGCAAAACATAAAATAAGAACAGAACGAAATTCTGGCTCAGTTATAGGTCTGTCTGACTCTGATGATATTCAAAGGGAAACAAATAAACTATTATCGGATTGCAAATTCAAATTGCAAAAAGCTGAACAGGATGTATCAACTCTTCAAGCAAATGTTGCTCGATTGGAAAGCCAAGTTATACGTTATAAATCTGCAGCTGAAGCGTCTGAAAAAGCTGAAGATGAAttgaaagtagaaaaaagaaaattgcaaCGAGAAgTCAGAGAATCCCAGGCTCGTGTGGAAGAACTAGAAACTTCCAATTCACACTTGCAGCGTCGTTTAGATAAACTAAAAAACGCCAAATCGGCTCTGCTTAAAGAGCTTTGA
- Protein Sequence
- MEASVAGRRRAATKSSAEDQALDQIAKEAEARLAARRQARAEAREIRMRELERQQKEAEENADKAFEMGGADATRIIRVTPDPVRAARLLTNSNNFQSSRRSSEDSLEDAGLGRDLRTELKETEEKFRKAMIANAQLDNEKSSYAYQVDLLKDKLEELEESIAQLRRELRDKNREAEQFKRLSQKTKEDLEICRAQLLERDTLIEENGLVIVDDESDENEESTKENGPICRRRVLVSTEAAELLQNAGEGSLDVRLRKFASDKKEMQDEIRHLRLELEEAKHKIRTERNSGSVIGLSDSDDIQRETNKLLSDCKFKLQKAEQDVSTLQANVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREVRESQARVEELETSNSHLQRRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_01484633;
- 80% Identity
- -