Tbra006018.1
Basic Information
- Insect
- Trichogramma brassicae
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_902806795.1
- Location
- CADCXV010000757.1:113795-118943[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.5e-98 5.9e-94 314.6 28.6 20 300 1 279 1 279 0.95 2 3 0.0013 22 4.1 3.7 120 171 277 328 276 331 0.93 3 3 0.04 6.8e+02 -0.8 6.1 115 236 314 351 297 354 0.42
Sequence Information
- Coding Sequence
- ATGAGAGAATTGGAAAGACAGcaaaaagaagcagaagaaaatGCAGACAAGGCTTTTGAAATGGGTGGAGCTGACGCAACCAGAATTATAAGGGTAACTCCAGATCCTGTCCGTGCTGCTCGTCTTTTAactaattcaaataattttcaatccaGTCGTAGATCTTCTGAAGATTCACTAGAGGACGCAGGTCTTGGGAGAGATCTACGAACCGAATTAAAAGaaacagaagaaaaatttcgcaAAGCAATGATTGCCAACGCTCAATTAGACAACGAAAAGTCTTCCTATGCATATCAAGTTGATTTGCTTAAAGACAAATTGGAAGAACTAGAGGAATCTATTGCTCAACTTCGACGTGAgcttcgagaaaaaaatcgtgaaGCAGAACAATTTAAGCGTCTCAGTCAAAAAACTAAAGAAGATTTAGAAATTTGTAGGGCTCAACTGTTAGAAAGGGACACtttaattgaagaaaatggTTTAGTCATTGTTGATGATGAAAGTGACGAAAATGAAGAGTCTACAAAAGAAAATGGACCAGTCTGTAGAAGAAGAGTGCTAGTCAGTACAGAAGCCGCAGAATTGTTACAAAATGCGGGTGAAGGTTCATTAGATGTTCGACTGCGAAAGTTTGCATCAGATAAGAAAGAAATGCAAGATGAAATTCGACATCTCAGGCTAGAACTAGAAGAAGCAAAACATAAAATAAGAACAGAACGAAATTCTGGCTCAGTTATAGGTCTGTCTGATTCTGATGATATTCAAAGGGAAACAAATAAACTGTTATCGGATTGCAAATTCAAATTGCAAAAAGCTGAACAGGATGTATCAACTCTTCAAGCAAATGTTGCTAGATTGGAAAGCCAAGTTATACGATATAAATCTGCAGCTGAAGCGTCTGAAAAAGCTGAAGATGAAttgaaagtagaaaaaagaaaattgcaaCGAGAAGTCAGAGAATCCCAGGCTCGTGTGGAAGAACTAGAAACTTCCAATTCTCACTTGCAGCGTCGTTTAGATAAACTAAAAAACGCCAAATCAGCTCTGCTTAAAGAGCTTTGA
- Protein Sequence
- MRELERQQKEAEENADKAFEMGGADATRIIRVTPDPVRAARLLTNSNNFQSSRRSSEDSLEDAGLGRDLRTELKETEEKFRKAMIANAQLDNEKSSYAYQVDLLKDKLEELEESIAQLRRELREKNREAEQFKRLSQKTKEDLEICRAQLLERDTLIEENGLVIVDDESDENEESTKENGPVCRRRVLVSTEAAELLQNAGEGSLDVRLRKFASDKKEMQDEIRHLRLELEEAKHKIRTERNSGSVIGLSDSDDIQRETNKLLSDCKFKLQKAEQDVSTLQANVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREVRESQARVEELETSNSHLQRRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_01484633;
- 80% Identity
- iTF_01483864;