Tden015756.1
Basic Information
- Insect
- Trichogramma dendrolimi
- Gene Symbol
- -
- Assembly
- GCA_034770305.1
- Location
- JAPMIB010000069.1:498942-500591[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 2.5 5.6e+03 -1.7 0.1 26 45 164 183 162 191 0.83 2 9 0.052 1.2e+02 3.7 0.0 27 48 193 214 186 217 0.89 3 9 0.034 76 4.3 0.0 26 48 220 242 217 248 0.89 4 9 0.097 2.2e+02 2.9 0.0 27 48 249 270 246 273 0.87 5 9 0.11 2.5e+02 2.7 0.1 26 48 304 326 298 330 0.91 6 9 0.21 4.8e+02 1.8 0.0 26 48 332 354 327 359 0.91 7 9 0.28 6.2e+02 1.4 0.0 26 48 360 382 356 384 0.89 8 9 0.54 1.2e+03 0.5 0.0 26 48 416 438 414 440 0.85 9 9 0.0018 4.1 8.4 0.1 26 48 472 494 450 496 0.89
Sequence Information
- Coding Sequence
- ATGGAATCGAGCAACGTATTCAATACTGCTGTTAGagtgaaaaaagagcCTCGTGATGAGCCTCTCAGTGATGATAATgattacaaaataattgacGCGACACCCGttactcaaaatttaaaatacgaGATGTTTCGGCGAGAAAATTCGATGCTTCAAGAATATGAcgtaaatcaaaaaattgtacttgACGACATTCAAATCGAGTTGGAATGTACAGACATGAAGCCCAACTTATTGTCAATGGTGAAAATCGAAGATTATTCTCCAAATCAATGTCAGGATAGCCTTGATTATAAAACCGGAAGCACAATTAAATTAGAAACTGTCGGGATGttgaagaaagaaatttttggCGAAGAAGCCGCTGAATTGAATTGTGGACGTGGACTCAGTGAACAAAATAAACAAGGAACTGTTTCCAAAGAGCTTAACTATGAACATAGGCTAAAAACTCACATTGATACTACGCATTATGGAATcacacatgcatgtgatatttgcggaaaatcATTCAGATATAAGAGTCATCTCCAAAGAAACATCGATTCGTTACATCGTAAAATCACGCATCCATGcgatatatgccaaaagacGTTCACACAAAAAggtaatctcaaaactcacatcgattcggtgcataatggtgTCACATATGCGTGTGATATTTGCGGGAATGTATTCAATCGTAAAGATGATCTCAATAGACATATCGATTCAGTGCATCATAAAATAAGGTATGGATGTGATATGtgccaaaagacattctcagACAAGAGTAATCTTAGAAagcacatcgattcggtgcatcaTAAAATTACGAATACTTGTAATAAATGCCCAAAGACATTCTCAGAAAAGAGTCGTCTCAAAAagcacatcgattcggtgcacaaAGGTGTTAGACATGCATGTGACATTTGCGGGAAGAATTTCACACAAAAAAGTATTCTCAATAGACACATCGAATCGGTGCATAATAAAGTTAGATatacatgtgatatatgtAAAAAGACATTCTCATACAAGAGTactctcaaaaaacacatcgattaCGAGCATAATGGTGTCAggcatgcatgtgatatatgccaaaagacattctcagacaagagtaatctcaaaactcacatcgatTCAGTGCACAATGGAATCGTCTTCGCATGTGACGTATgcgaaaagacattcacaACAAAGTATTATCTCCAAAACCATATCAACGCAGTGCACAATGGAATCGGCTTCGCATGTGACGTATGCGGAAAGAATTTCACACGTAAAAATGATCTCAAAAGGCATATGGATGCGGAGCACAATGGAATCACCCACGCATGTGAtttctgtgaaaaaaaatttaaatatcaaacTCAACTTCATAAGCATGTCAAATCGTCTCATAATGGTATCATACATTCATGCGAGACATGCGACAAGACATTCGGACAGAAAAGAAATCTCAGAGCTCACATCGATATGGCGCATCGCACTCTCATTATGAcctaa
- Protein Sequence
- MESSNVFNTAVRVKKEPRDEPLSDDNDYKIIDATPVTQNLKYEMFRRENSMLQEYDVNQKIVLDDIQIELECTDMKPNLLSMVKIEDYSPNQCQDSLDYKTGSTIKLETVGMLKKEIFGEEAAELNCGRGLSEQNKQGTVSKELNYEHRLKTHIDTTHYGITHACDICGKSFRYKSHLQRNIDSLHRKITHPCDICQKTFTQKGNLKTHIDSVHNGVTYACDICGNVFNRKDDLNRHIDSVHHKIRYGCDMCQKTFSDKSNLRKHIDSVHHKITNTCNKCPKTFSEKSRLKKHIDSVHKGVRHACDICGKNFTQKSILNRHIESVHNKVRYTCDICKKTFSYKSTLKKHIDYEHNGVRHACDICQKTFSDKSNLKTHIDSVHNGIVFACDVCEKTFTTKYYLQNHINAVHNGIGFACDVCGKNFTRKNDLKRHMDAEHNGITHACDFCEKKFKYQTQLHKHVKSSHNGIIHSCETCDKTFGQKRNLRAHIDMAHRTLIMT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01482678;
- 90% Identity
- iTF_01482678;
- 80% Identity
- iTF_01482841; iTF_01482682;