Tden015756.1
Basic Information
- Insect
- Trichogramma dendrolimi
- Gene Symbol
- -
- Assembly
- GCA_034770305.1
- Location
- JAPMIB010000069.1:498942-500591[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.5 3e+02 2.3 0.8 19 37 165 176 162 191 0.79 2 12 0.0094 1.8 9.4 0.2 19 44 193 215 187 215 0.93 3 12 0.058 11 6.9 0.2 19 43 221 242 218 243 0.89 4 12 0.0032 0.63 10.9 0.9 19 43 249 270 245 271 0.94 5 12 0.00065 0.13 13.1 1.2 17 44 275 299 272 299 0.94 6 12 0.014 2.8 8.8 1.5 19 44 305 327 302 327 0.93 7 12 0.0008 0.16 12.8 0.9 18 43 332 354 328 355 0.89 8 12 0.00049 0.096 13.5 0.5 19 44 361 383 357 383 0.94 9 12 2.6 5.1e+02 1.6 0.2 18 29 388 399 386 411 0.69 10 12 0.005 0.97 10.3 0.1 19 44 417 439 415 439 0.91 11 12 0.12 23 5.9 2.6 19 44 445 467 442 467 0.92 12 12 1.2 2.3e+02 2.7 0.9 19 44 473 495 470 495 0.89
Sequence Information
- Coding Sequence
- ATGGAATCGAGCAACGTATTCAATACTGCTGTTAGagtgaaaaaagagcCTCGTGATGAGCCTCTCAGTGATGATAATgattacaaaataattgacGCGACACCCGttactcaaaatttaaaatacgaGATGTTTCGGCGAGAAAATTCGATGCTTCAAGAATATGAcgtaaatcaaaaaattgtacttgACGACATTCAAATCGAGTTGGAATGTACAGACATGAAGCCCAACTTATTGTCAATGGTGAAAATCGAAGATTATTCTCCAAATCAATGTCAGGATAGCCTTGATTATAAAACCGGAAGCACAATTAAATTAGAAACTGTCGGGATGttgaagaaagaaatttttggCGAAGAAGCCGCTGAATTGAATTGTGGACGTGGACTCAGTGAACAAAATAAACAAGGAACTGTTTCCAAAGAGCTTAACTATGAACATAGGCTAAAAACTCACATTGATACTACGCATTATGGAATcacacatgcatgtgatatttgcggaaaatcATTCAGATATAAGAGTCATCTCCAAAGAAACATCGATTCGTTACATCGTAAAATCACGCATCCATGcgatatatgccaaaagacGTTCACACAAAAAggtaatctcaaaactcacatcgattcggtgcataatggtgTCACATATGCGTGTGATATTTGCGGGAATGTATTCAATCGTAAAGATGATCTCAATAGACATATCGATTCAGTGCATCATAAAATAAGGTATGGATGTGATATGtgccaaaagacattctcagACAAGAGTAATCTTAGAAagcacatcgattcggtgcatcaTAAAATTACGAATACTTGTAATAAATGCCCAAAGACATTCTCAGAAAAGAGTCGTCTCAAAAagcacatcgattcggtgcacaaAGGTGTTAGACATGCATGTGACATTTGCGGGAAGAATTTCACACAAAAAAGTATTCTCAATAGACACATCGAATCGGTGCATAATAAAGTTAGATatacatgtgatatatgtAAAAAGACATTCTCATACAAGAGTactctcaaaaaacacatcgattaCGAGCATAATGGTGTCAggcatgcatgtgatatatgccaaaagacattctcagacaagagtaatctcaaaactcacatcgatTCAGTGCACAATGGAATCGTCTTCGCATGTGACGTATgcgaaaagacattcacaACAAAGTATTATCTCCAAAACCATATCAACGCAGTGCACAATGGAATCGGCTTCGCATGTGACGTATGCGGAAAGAATTTCACACGTAAAAATGATCTCAAAAGGCATATGGATGCGGAGCACAATGGAATCACCCACGCATGTGAtttctgtgaaaaaaaatttaaatatcaaacTCAACTTCATAAGCATGTCAAATCGTCTCATAATGGTATCATACATTCATGCGAGACATGCGACAAGACATTCGGACAGAAAAGAAATCTCAGAGCTCACATCGATATGGCGCATCGCACTCTCATTATGAcctaa
- Protein Sequence
- MESSNVFNTAVRVKKEPRDEPLSDDNDYKIIDATPVTQNLKYEMFRRENSMLQEYDVNQKIVLDDIQIELECTDMKPNLLSMVKIEDYSPNQCQDSLDYKTGSTIKLETVGMLKKEIFGEEAAELNCGRGLSEQNKQGTVSKELNYEHRLKTHIDTTHYGITHACDICGKSFRYKSHLQRNIDSLHRKITHPCDICQKTFTQKGNLKTHIDSVHNGVTYACDICGNVFNRKDDLNRHIDSVHHKIRYGCDMCQKTFSDKSNLRKHIDSVHHKITNTCNKCPKTFSEKSRLKKHIDSVHKGVRHACDICGKNFTQKSILNRHIESVHNKVRYTCDICKKTFSYKSTLKKHIDYEHNGVRHACDICQKTFSDKSNLKTHIDSVHNGIVFACDVCEKTFTTKYYLQNHINAVHNGIGFACDVCGKNFTRKNDLKRHMDAEHNGITHACDFCEKKFKYQTQLHKHVKSSHNGIIHSCETCDKTFGQKRNLRAHIDMAHRTLIMT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01482678;
- 90% Identity
- iTF_01482678;
- 80% Identity
- iTF_01483507;