Tcas006900.1
Basic Information
- Insect
- Tribolium castaneum
- Gene Symbol
- TFIP11
- Assembly
- GCA_000002335.3
- Location
- NC:11403574-11415472[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3e-98 8.4e-95 317.0 14.9 2 275 375 645 374 645 0.98 2 2 0.12 7.4e+02 -1.0 0.0 242 268 657 683 649 689 0.73
Sequence Information
- Coding Sequence
- ATGTCGGACGACGAGATGGAAAAGTTCGAAATAACGGATTACGATTTAAACAATGAGTTTTACCGTGGTAGAAAAAAGTTAAGCAAACACCAGCAGATTTATGGTATATGGGCAGACGACAGTGATAATGACGAAGAAGAGCGACCTTCGTTTAAATCACGAAAACCTAAAAATTATTCCGCCCCGATTGGTTTTGTTGCGGGGGGTGTCCAACAAGCGGGTAAAAAACCCGAAAATGTTAAAAAAGAAGACGAAAGTGATGAGGAAAAACCAACGACGAGTTTTAAACTTAAGGATAGCTCAAGTGATTCAGAGGATGAACGTCCAAGGCCAGGGTTCGGTGGGGTCCAAGAAAGTGGGGACATTGCAGGCCTACGTAACAAAACTCACTCGCAACCTATGCAAGGGGTGGGAAATTGGGAAAGACACACAAAGGGGATTGGGGCAAAGCTTCTATTACAGATGGGTTTTCAACCGGGGAAGGGGCTAGGGAAAGACTTACAAGGGATTTCAGCCCCGGTGGAGGCCCACTTGAGGAAGGGCCGGGGGGCTATTGGGGCCTACGGGCCAGAAAAATCCGCAAGCATTCCAAAGAAAAAGGAAGTCAAGGAGGAAATTGAAGATGAGCCCGACCACAAGTGGAAGAAAAACGATTCGTCAAAGAAAAAAACGCGCTATTATTACCGGAGCGTTGATGATGTGATAGAAAAGGGCAAAAGACCGGGGGCTTTCCGGACCACGCTTGGAAGCGAGTTGAGCAAAGTCAAAGTGATCGATATGACGGGGCCCCAACAGAGGGTCTTAAGCGGGTATCACGCTTTAAGTGGGCTCAAAGCGCCCCCAGGTGTTGAACATTTCGAAGATGTTGTGCATAAAAAATGTTCCAATTTTACATTACCCGAAATTCAACATAATCTCGATGTTTTGGTTGATATGTGTGAACAGGATATTATTAGAATAGATAGAAATACGAGGTTTAATCAGGATAAAATTGTGGCGCTCAGACAGGAACAAGAAACATTGAAAAGTCAAGTACAAAGGGAGAGTGATGTTGTTGATAGCTTGAAAGACGTCATTGAGATTGTCGATAAGTTGTTGAACCCCGATTTGGGGCTGTCTTTGCTGCAGGTCGCACAAATTTTTAAGAACTTATTGGAGAACCACTACGAGGAGTTTGTGAGGTACGAATTGGGTGAATTGGCGCCTGGTTTGGTTGGTCCTCTATTGACATCGGCCCTCGCCAGTTGGTCGCCACTGACCAATCCCAAGCAATACATGGAAATTTTTGCCCGTTGGAAGGACATTCTGGAGAAGCCCAGACAACGTGGGACACTAGAAGGTAATAATATGGGAATTCAGCCATATGATAGTCTCTTATGGCACACTTGGATGCCTGTAATGCGAATTTGTGTTAGTGCTTGGAATCCAAAAGATTGTGATCCTCTGATAACGCTGATTGAAACCTGGATGCCGTTATTGCCGCAGTGGATATTGGACAACATTTACGACCAACTTATCATGCCTCGAATCCAGGCTGAAGTCAATATCTGGAATCCCCTGACAGACACAATCCCAATTCATGTCTGGATACATCCCTGGATACCTTTACTCGATACCAGACTTCAAGCTATTATTTATCCAATAATTCAGGAAAAACTCGGTGTGGCTTTAACAAACTGGCACCCGTCTGATAAATCAGCCAAGCCAATGTTAAAACCGTGGCAAAGAGTGCTACCAGATGGCGTCTTCGTTGCATTCCTGCTCAAACACATTGTACCAAAGCTACAGCTTTGTATGCAAAACTTAGTTATAAACCCACATCAACAACATTTAGACGCATGGTATTGGGTCATGGATTGGAGTGATATGTTATCAGTCGGGAACATGACACTCATTTTAGATAAATTTTTCTTCCCCAGATGGCGACAAACCCTAGCCATGTGGTTGAATCACAACCCGAATTATGCAGAAGTCACTGATTGGTACACGGGCTGGAAAAATATGCTTTCGGACGAGTTATTAGCACAACCCACCATTAAAGAAAATTTCCACACGGCGCTTGAGATTATGAACAGAGCGGTAAATATCGGCCAACAACCAGGAGCCAAGGAATCGATTTCGTACCTGAGTATGGAAAATAACGCACCGCCACCTCCACCTCCTCCTCGAGTTGAGAGTTTCGCTGAGACTGTGAGGACAGTTTCAAAAATTCCCCCGCTTTACAAAGACCTAGTCGCGAAACGATGCGAAGAACGTGGGATTTTGTTTGTCCCTATACCGAACAAATATTACGAAGCGAAACAAGTGTATAGGATAGGGTCTAATGGACTTCAGTGTTACATTGATAGGAATGTGGTTTTTTCGTCACAAAATAACACAAACTGGGTTCCCACTTCATTGAACAGACTGTTAGACATGGCGTAA
- Protein Sequence
- MSDDEMEKFEITDYDLNNEFYRGRKKLSKHQQIYGIWADDSDNDEEERPSFKSRKPKNYSAPIGFVAGGVQQAGKKPENVKKEDESDEEKPTTSFKLKDSSSDSEDERPRPGFGGVQESGDIAGLRNKTHSQPMQGVGNWERHTKGIGAKLLLQMGFQPGKGLGKDLQGISAPVEAHLRKGRGAIGAYGPEKSASIPKKKEVKEEIEDEPDHKWKKNDSSKKKTRYYYRSVDDVIEKGKRPGAFRTTLGSELSKVKVIDMTGPQQRVLSGYHALSGLKAPPGVEHFEDVVHKKCSNFTLPEIQHNLDVLVDMCEQDIIRIDRNTRFNQDKIVALRQEQETLKSQVQRESDVVDSLKDVIEIVDKLLNPDLGLSLLQVAQIFKNLLENHYEEFVRYELGELAPGLVGPLLTSALASWSPLTNPKQYMEIFARWKDILEKPRQRGTLEGNNMGIQPYDSLLWHTWMPVMRICVSAWNPKDCDPLITLIETWMPLLPQWILDNIYDQLIMPRIQAEVNIWNPLTDTIPIHVWIHPWIPLLDTRLQAIIYPIIQEKLGVALTNWHPSDKSAKPMLKPWQRVLPDGVFVAFLLKHIVPKLQLCMQNLVINPHQQHLDAWYWVMDWSDMLSVGNMTLILDKFFFPRWRQTLAMWLNHNPNYAEVTDWYTGWKNMLSDELLAQPTIKENFHTALEIMNRAVNIGQQPGAKESISYLSMENNAPPPPPPPRVESFAETVRTVSKIPPLYKDLVAKRCEERGILFVPIPNKYYEAKQVYRIGSNGLQCYIDRNVVFSSQNNTNWVPTSLNRLLDMA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00870574;
- 90% Identity
- iTF_01480883;
- 80% Identity
- -