Basic Information

Insect: Trachymyrmex septentrionalis
Gene Symbol: -
Assembly: GCA_001594115.1
Location: NW:1833478-1839769[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00035 0.022 14.5 0.3 1 20 61 80 61 82 0.94

2 13 5.1e-05 0.0032 17.1 2.5 1 19 156 174 156 174 0.99

3 13 4.7e-05 0.003 17.2 3.9 2 23 186 208 185 208 0.95

4 13 0.00015 0.0094 15.6 1.4 1 21 214 234 214 235 0.95

5 13 1e-07 6.4e-06 25.6 2.4 1 23 246 268 246 268 0.98

6 13 5.9e-05 0.0037 16.9 1.2 2 23 278 299 277 299 0.98

7 13 0.00023 0.014 15.1 0.2 2 23 306 327 305 327 0.97

8 13 2.4e-06 0.00015 21.3 2.0 1 23 333 355 333 355 0.99

9 13 4e-06 0.00026 20.6 1.8 1 23 361 383 361 383 0.94

10 13 3.8e-05 0.0024 17.5 1.1 1 23 389 412 389 412 0.94

11 13 0.0001 0.0066 16.1 0.5 1 23 418 440 418 440 0.94

12 13 1.3e-07 8.2e-06 25.3 1.1 1 23 446 468 446 468 0.99

13 13 1.5e-05 0.00095 18.8 1.5 2 23 475 497 474 497 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00035	0.022	14.5	0.3	1	20	61	80	61	82	0.94
2	13	5.1e-05	0.0032	17.1	2.5	1	19	156	174	156	174	0.99
3	13	4.7e-05	0.003	17.2	3.9	2	23	186	208	185	208	0.95
4	13	0.00015	0.0094	15.6	1.4	1	21	214	234	214	235	0.95
5	13	1e-07	6.4e-06	25.6	2.4	1	23	246	268	246	268	0.98
6	13	5.9e-05	0.0037	16.9	1.2	2	23	278	299	277	299	0.98
7	13	0.00023	0.014	15.1	0.2	2	23	306	327	305	327	0.97
8	13	2.4e-06	0.00015	21.3	2.0	1	23	333	355	333	355	0.99
9	13	4e-06	0.00026	20.6	1.8	1	23	361	383	361	383	0.94
10	13	3.8e-05	0.0024	17.5	1.1	1	23	389	412	389	412	0.94
11	13	0.0001	0.0066	16.1	0.5	1	23	418	440	418	440	0.94
12	13	1.3e-07	8.2e-06	25.3	1.1	1	23	446	468	446	468	0.99
13	13	1.5e-05	0.00095	18.8	1.5	2	23	475	497	474	497	0.95

Sequence Information

Coding Sequence: ATGGCAAATGGAATGGAGAAGATAGAAATTCTGAAGATTGAGGAGTGTAGTGATCTAATTGTGGACGAAACTAATGGGATTATGTTTGACATGGACCTCTCACAAGATGAATCTTTAGTTGTAACTGACAGCACAGCCACTGACAATAAGAaaggTGTGGTTATTTCAATTGTAACCGATTATCAATGTGTGACATGTCAACGTATTTTCCAATCAAAGGATATGTTGCAGAAGCATGTAGACACATGCAGAGAGGAAGATGACTCAAACAACATTCTTGGTAATGTAGTAAGTTACGATtcagaagaagaggaagaggatgAAGATGATCCACTTTTAAATGCTGAAGATTCGGATTCTAAGAGCCAAAAGAATAACAACGAGAAACCTCTCATCAAACCCGTGCCTGAAACGCAGTGCCATTGCTGTGCGGAAGACTTAAAGACGGCTCATAGCGGCGGAGAATACAAATGTTCACATTGTGATCTcagttttaagaaaaaagcATCTTTGGAAAGACACGATGTAGTCATACATTGGATTTGCGAGTCGTGCACATGCAATGAATGCGGTTCTTCTTTTCGTGATAAGAAAGCTTTAAATAAGCATCGCTATACGACACACGgagatcgtaaaatttttaaatgtgATCCTTGCGACACTTATTTCTCTCGGAGCTATCACTTAAATCGACATATACTGCAGTCTGGTTGTCATGGTAAcatacttaataaattcagTTGTCAAGTTTGCAAGAAAGACTTTACGCGTAAGGATAACTTGCGGGAACACTTGCGTACTCACGCGGGCACGCCTCAAAGACAAAAGAAGAAATGCAACTATTGCCCAAAGgaattttttacataccaaCAATTGTTGGTACACGAACGTATGCATACGGGAGAACGACCAGTCCAATGCGATTTATGTCCGAAGACATTCCTGTCGCCGCTCGCGCTGAAAAAGCATCGTCGTGTACACACTGGAGAGAAGCCGTTtgaatgtaaatatTGTCAAAGAAAATTTGCTGCTCGCGAAACGCTGAATCGTCACCTACGGACGCACACGGGTGAAAAACCACATGTGTGTCAGTATTGTGGCAAATCGTTCATTCAAGCAGCGCAATTAAGAGCACATGTGTTCCATCACACTGGAGAAAATGGTTTCTACTGTGATGTGTGCGACAAGGCATTTAATCGGAAGGCGCGTTTAAATATCCACAAGAAGTTCGTACATGAGGGAGCGATTCCATTTACGTGTGAAGTCTGTGATAAGGGTTTCATGCGAAAGGAGGACATGATGAAACACAAAGTGCTACACACTGGCATCAAACCGTTCAAATGCGACAAGTGTTCGAAGGCCTTTTCGGTCAAATCATCGTTGCAAGCACACCTCAACACTCACAGACGCGAACCGCCCCAGTCATGCGTCGAATGCAATAGAGTGTTTATCCGACAAGATTGTCTGATGCGACACATTCGGGCGAAGCATCGGGAACTGTTGGAGGATGTAATGAACGAGGTCGAGAAGAAACATTTGCAAACGCAGTTGTACAACATTGCATCGACCGCTGCTGCCAAAATGAAAACCGGCAAATCTAGAAGACTCTCCACCGACGAGCTATTGAAAGCCATTGTAGATCTTTTGAGATTACTTATCGATGAGGAAACATTACAGCTATTTGGTTGGCCGGATGCTCCAATACAAGACGTCCTCGAGGCTGTAATCAGAAGATGCGGACATGAGCCGATAACATCGGAGGCCAACGTAGTGTTTACTGAGAGGCTGCGACAAAACGTCAAGCTTCTATTCACTGTCGTCGTCGACACGGTGAATGACGAAATAGTGAAATCTCTCTTGACAACGAAAACGGTGGACGATGTCATTCTTCACGTTTTAGAAATATCTAATCAAAATtag
Protein Sequence: MANGMEKIEILKIEECSDLIVDETNGIMFDMDLSQDESLVVTDSTATDNKKGVVISIVTDYQCVTCQRIFQSKDMLQKHVDTCREEDDSNNILGNVVSYDSEEEEEDEDDPLLNAEDSDSKSQKNNNEKPLIKPVPETQCHCCAEDLKTAHSGGEYKCSHCDLSFKKKASLERHDVVIHWICESCTCNECGSSFRDKKALNKHRYTTHGDRKIFKCDPCDTYFSRSYHLNRHILQSGCHGNILNKFSCQVCKKDFTRKDNLREHLRTHAGTPQRQKKKCNYCPKEFFTYQQLLVHERMHTGERPVQCDLCPKTFLSPLALKKHRRVHTGEKPFECKYCQRKFAARETLNRHLRTHTGEKPHVCQYCGKSFIQAAQLRAHVFHHTGENGFYCDVCDKAFNRKARLNIHKKFVHEGAIPFTCEVCDKGFMRKEDMMKHKVLHTGIKPFKCDKCSKAFSVKSSLQAHLNTHRREPPQSCVECNRVFIRQDCLMRHIRAKHRELLEDVMNEVEKKHLQTQLYNIASTAAAKMKTGKSRRLSTDELLKAIVDLLRLLIDEETLQLFGWPDAPIQDVLEAVIRRCGHEPITSEANVVFTERLRQNVKLLFTVVVDTVNDEIVKSLLTTKTVDDVILHVLEISNQN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01423083;
90% Identity: iTF_01476423; iTF_00016833; iTF_00417762; iTF_01477793; iTF_00182762; iTF_01261970; iTF_00016193; iTF_00014888; iTF_00015542; iTF_00181467; iTF_00182123;
80% Identity: -