Basic Information

Insect: Trachymyrmex cornetzi
Gene Symbol: -
Assembly: GCA_001594075.1
Location: NW:5928800-5933252[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00035 0.024 14.5 0.4 1 20 62 81 62 83 0.94

2 13 5.3e-05 0.0037 17.1 2.5 1 19 157 175 157 175 0.99

3 13 0.00089 0.062 13.2 3.6 2 23 187 209 186 209 0.95

4 13 0.0017 0.12 12.4 3.6 1 21 215 235 215 240 0.93

5 13 1e-07 7.2e-06 25.6 2.4 1 23 247 269 247 269 0.98

6 13 6.1e-05 0.0042 16.9 1.2 2 23 279 300 278 300 0.98

7 13 0.00024 0.016 15.0 0.2 2 23 307 328 306 328 0.97

8 13 2.4e-06 0.00017 21.3 2.0 1 23 334 356 334 356 0.99

9 13 4.2e-06 0.00029 20.6 1.8 1 23 362 384 362 384 0.94

10 13 3.9e-05 0.0027 17.5 1.1 1 23 390 413 390 413 0.94

11 13 7.8e-07 5.4e-05 22.9 0.8 1 23 419 441 419 441 0.97

12 13 1.3e-07 9.3e-06 25.3 1.1 1 23 447 469 447 469 0.99

13 13 1.5e-05 0.0011 18.8 1.5 2 23 476 498 475 498 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00035	0.024	14.5	0.4	1	20	62	81	62	83	0.94
2	13	5.3e-05	0.0037	17.1	2.5	1	19	157	175	157	175	0.99
3	13	0.00089	0.062	13.2	3.6	2	23	187	209	186	209	0.95
4	13	0.0017	0.12	12.4	3.6	1	21	215	235	215	240	0.93
5	13	1e-07	7.2e-06	25.6	2.4	1	23	247	269	247	269	0.98
6	13	6.1e-05	0.0042	16.9	1.2	2	23	279	300	278	300	0.98
7	13	0.00024	0.016	15.0	0.2	2	23	307	328	306	328	0.97
8	13	2.4e-06	0.00017	21.3	2.0	1	23	334	356	334	356	0.99
9	13	4.2e-06	0.00029	20.6	1.8	1	23	362	384	362	384	0.94
10	13	3.9e-05	0.0027	17.5	1.1	1	23	390	413	390	413	0.94
11	13	7.8e-07	5.4e-05	22.9	0.8	1	23	419	441	419	441	0.97
12	13	1.3e-07	9.3e-06	25.3	1.1	1	23	447	469	447	469	0.99
13	13	1.5e-05	0.0011	18.8	1.5	2	23	476	498	475	498	0.95

Sequence Information

Coding Sequence: ATGGCAAATGGAATAGAGAAGATAGAAATCCTAAAGATTGAGCAGTGTAGTGATGATTTAATTGAGGATGAAACCAATGGGATCATGTTTGATATGGACCTCTCACAAGATGAATCTTTAGTTGTGACTGACAGTGCAGCCATTGACgaaaagaaaagCGTGGTTATTTCAATTGTAACCGATTATCAATGTGTGACATGTCAACGTATTTTCCAATCAAAGGACATGTTGAAGAAGCATGTAGACACATGCAGAGAGGAAGATGACTCAAACAACATGCTTGATAATATAGTAAGTTACGATtcagaagaagaggaagagaatgAAGATGATCCACTTTTAAATGCTGAAGATTCGGATTCTAAGGGccaaaaaaataacaatgaaaaaccTCTCATCAAGCCCGTGCTCGAAACACAATGCCATTGCTGTGCGGAAGACTTAAAGACGGCCCATAGCGGCGGACAATACAAGTGTTCACATTGTGATCTCAGCTTCAAGAAAAAAGCATCTCTGGAAAGACACGATGTAGTCATACATTGGGTATGCGATTCGTGCACATGCAATGAATGCGGTTCTCTTTTTCGTGATAAAAAAGCTTTAAATAAGCATCGCTATACGACACACGGAGATcgcaaaatttttaagtgTGTTCCTTGCGACACTTATTTCTCTCGAAGCTATCACTTAAATCGACATATAATGCAATCTGGTTGTCACGGTAacatacttaataaattcagtTGTCAAGTTTGCAAGAAAGACTTTACGCGTAAGGATAACTTGCGGGAACACCTGCGTACTCACGCGGGCACGCCTCAGAGACAAAAGAAGAAATGCAACTACTGCCCGAAAGAATTCTTTACGTACCAACAATTGTTGGTACACGAACGCATGCATACGGGAGAGCGACCAGTCCAATGCGATTTATGTCCGAAGACATTCCTGTCGCCGCTCGCGCTGAAAAAGCATCGTCGTGTACACACCGGAGAGAAGCCGTTTGAATGTAAATACTGTCAGAGAAAATTTGCCGCTCGCGAAACGCTGAATCGTCACCTACGGACGCACACGGGTGAAAAACCACATGTGTGTCAGTACTGTGGCAAATCGTTTATTCAAGCAGCGCAATTAAGAGCACATGTGTTTCATCATACTGGAGAAAATGGTTTCTACTGTGATGTGTGCGACAAGGCATTTAATCGGAAGGCGCGTTTGAACATCCACAAGAAGTTCGTACACGAGGGAGCGATTCCATTTACGTGTGAAGTCTGCGATAAGGGTTTCACGCGAAAGGAGGACTTGATGAAACACAAACTGTTACACACTGGCATTAAACCGTTCAAATGCGACAAGTGTTCAAAGGCCTTCTCGGTGAAGTCGTCGTTGCAAGCGCACCTCAACACTCACAGACGCGAACCGCCCCAGTCATGCGTTGAATGCAATAGAGTATTTATTCGACAAGATTGTCTGATGCGACATATTCGGGCGAAGCATCGGGAACTGTTGGAGGACGTAATGAACGAGGTCGAGAAGAAACATTTGCAAACGCAATTGTATAACATCGCATCGACCGCTGCTGCCAAAATGAAAACCGGCAAATCTAGAAGACTCTCCACCGATGAGTTGTTGAAAGCCATTGTAGATCTTTTGAGATTACTTATCGATGAGGAAACATTACAGCTATTTGGTTGGCCGGATGCTCCAATACAAGACGTCCTCGAGGCTGTAATTAGAAGATGCGGACATGAGCCGATGACATCGGAGACCAACATGGTGTTTACTGAGAGGCTGCGACAAAACGTCAAGCTTCTATTCACTGTCGTCGTCGACACGGTGAATGACGAAATAGTGAAATCTCTCTTGACAACGAAAACGGTGGACGATGTCATTCTTCACGTTTTAGAAATATCTAATCAAAATTag
Protein Sequence: MANGIEKIEILKIEQCSDDLIEDETNGIMFDMDLSQDESLVVTDSAAIDEKKSVVISIVTDYQCVTCQRIFQSKDMLKKHVDTCREEDDSNNMLDNIVSYDSEEEEENEDDPLLNAEDSDSKGQKNNNEKPLIKPVLETQCHCCAEDLKTAHSGGQYKCSHCDLSFKKKASLERHDVVIHWVCDSCTCNECGSLFRDKKALNKHRYTTHGDRKIFKCVPCDTYFSRSYHLNRHIMQSGCHGNILNKFSCQVCKKDFTRKDNLREHLRTHAGTPQRQKKKCNYCPKEFFTYQQLLVHERMHTGERPVQCDLCPKTFLSPLALKKHRRVHTGEKPFECKYCQRKFAARETLNRHLRTHTGEKPHVCQYCGKSFIQAAQLRAHVFHHTGENGFYCDVCDKAFNRKARLNIHKKFVHEGAIPFTCEVCDKGFTRKEDLMKHKLLHTGIKPFKCDKCSKAFSVKSSLQAHLNTHRREPPQSCVECNRVFIRQDCLMRHIRAKHRELLEDVMNEVEKKHLQTQLYNIASTAAAKMKTGKSRRLSTDELLKAIVDLLRLLIDEETLQLFGWPDAPIQDVLEAVIRRCGHEPMTSETNMVFTERLRQNVKLLFTVVVDTVNDEIVKSLLTTKTVDDVILHVLEISNQN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01423083;
90% Identity: iTF_01477076;
80% Identity: -