Basic Information

Insect: Acromyrmex echinatior
Gene Symbol: -
Assembly: GCA_000204515.1
Location: NW:892000-922873[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00038 0.023 14.4 0.3 1 20 62 81 62 83 0.94

2 13 5.5e-05 0.0033 17.1 2.5 1 19 157 175 157 175 0.99

3 13 5.1e-05 0.003 17.2 3.9 2 23 187 209 186 209 0.95

4 13 0.00063 0.038 13.8 3.9 1 21 215 235 215 240 0.94

5 13 1.1e-07 6.6e-06 25.6 2.4 1 23 247 269 247 269 0.98

6 13 6.3e-05 0.0038 16.9 1.2 2 23 279 300 278 300 0.98

7 13 0.00025 0.015 15.0 0.2 2 23 307 328 306 328 0.97

8 13 0.00017 0.011 15.5 1.3 2 23 343 364 343 364 0.97

9 13 4.4e-06 0.00026 20.5 1.8 1 23 370 392 370 392 0.94

10 13 4.1e-05 0.0025 17.5 1.1 1 23 398 421 398 421 0.94

11 13 1.7e-05 0.001 18.7 0.5 1 23 427 449 427 449 0.94

12 13 1.4e-07 8.4e-06 25.2 1.1 1 23 455 477 455 477 0.99

13 13 1.6e-05 0.00097 18.8 1.5 2 23 484 506 483 506 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00038	0.023	14.4	0.3	1	20	62	81	62	83	0.94
2	13	5.5e-05	0.0033	17.1	2.5	1	19	157	175	157	175	0.99
3	13	5.1e-05	0.003	17.2	3.9	2	23	187	209	186	209	0.95
4	13	0.00063	0.038	13.8	3.9	1	21	215	235	215	240	0.94
5	13	1.1e-07	6.6e-06	25.6	2.4	1	23	247	269	247	269	0.98
6	13	6.3e-05	0.0038	16.9	1.2	2	23	279	300	278	300	0.98
7	13	0.00025	0.015	15.0	0.2	2	23	307	328	306	328	0.97
8	13	0.00017	0.011	15.5	1.3	2	23	343	364	343	364	0.97
9	13	4.4e-06	0.00026	20.5	1.8	1	23	370	392	370	392	0.94
10	13	4.1e-05	0.0025	17.5	1.1	1	23	398	421	398	421	0.94
11	13	1.7e-05	0.001	18.7	0.5	1	23	427	449	427	449	0.94
12	13	1.4e-07	8.4e-06	25.2	1.1	1	23	455	477	455	477	0.99
13	13	1.6e-05	0.00097	18.8	1.5	2	23	484	506	483	506	0.95

Sequence Information

Coding Sequence: ATGGCAAATGGAATGGAGAAGATAGAAATCCTGAAGATTGAGGAGTGTAGTCATGATCTAATTGTGGACGAAACTAATGGGATCGTGTTTGATATGGACCTCTCACAAGACGAATCTTTAGTTGTGACTGACAGCGCAGCCACTGCCAATAAGAAAggtgTGGTTATTTCAATTGTAACCGATTATCAATGTGTGACATGTCAACGTATTTTCCAATCAAAGGACATGTTGCAGAAGCATGTAGACACATGCAGAGAGGAAGATGATTCAAATAACATGCTTGGTAATATAGTAACTTACGATtcagaagaagaggaagaggatgAAGATGATCCACTTTTAAATGCTGAAGATTCGGATTCTAAGGGCCAAAAGAATAACAATGAAAAACCTCTCATCAAACCCGTGCCCGAAACGCAGTGTCATTGCTGTGCGGAAGACTTAAAGACGGCCCATAGCGGCGGAGAATATAAGTGTTCACATTGTGATCTCAGCTTCAAGAAAAAAGCATCTTTGGAAAGACACGATGTAGTCATACATTGGACTTGCGATTCGTGCACATGCAATGAATGCGGTTCTTCTTTCCGTGATAAGAAAGCTTTAAATAAGCATCGCTATACGACACACGGAGAtcgcaaaatttttaaatgtgATCCTTGCGACACATATTTCTCTCGGAGCTATCATTTAAATCGACATATAATGCAGTCTGGTTGTCATGGTAacatacttaataaatttagttgtCAAGTTTGCAAGAAAGACTTTACGCGTAAGGATAATTTGCGGGAACACTTGCGTACTCACGCGGGCACGCCTCAGAGACAAAAGAAGAAATGCAACTATTGCCCGAAGGAATTCTTTACGTACCAACAATTGTTGGTACACGAACGCATGCATACGGGAGAGCGACCAGTCCAATGCGATTTATGTCCGAAGACATTCCTGTCGCCGCTCGCGCTGAAAAAGCATCGTCGGGTACACACCGGAGAGAAGCCGTTTGAATGTAAATaccTAGCTGAACGGACATGTGCTTTCTGTCAGAGAAAATTTGCTGCTCGCGAAACGCTGAATCGTCACCTAAGGACGCACACGGGTGAAAAACCACATGTGTGCCAATATTGTGGCAAATCATTCATTCAAGCAGCGCAATTAAGAGCACATGTGTTCCATCACACTGGAGAAAATGGTTTCTATTGTGATGTATGCGACAAGGCATTTAATCGGAAGGCGCGTTTGAACATCCACAAAAAGTTCGTACACGAGGGAGCGATTCCATTTACGTGTGAAGTCTGCGATAAAGGTTTCATGCGAAAGGAGGACTTGATGAAACACAAAGTGCTACATACTGGCATCAAACCGTTCAAATGCGACAAGTGTTCGAAGGCCTTCTCGGTGAAGTCATCGTTACAAGCGCACCTCAACACTCACAGACGCGAACCGCCCCAGTCATGCGTCGAATGCAATAGAGTGTTTATCCGACAAGATTGTCTGATGCGACACATTCGGGCGAAGCATCGGGAACTATTGGAGGACGTAATGAACGAGGTTGAGAAGAAACATTTACAAACACAGTTGTATAACATCGCATCGACCGCTGCTGCCAAAATGAAAACCGGCAAATCTAGAAGACTCTCCACCGACGAATTGTTGAAAGCTATTGTAGATCTTTTGAGATTACTTATCGATGAGGAAACATTACAGCTATTTGGTTGGCCGGATGCTCCAATACAAGATGTCCTCGAAGCTGTAATCAGAAGATGCGGACATGAGCCGATAACATCGGAGACCAACATGGTGTTTACTGAGAGGCTGCGACAAAACGTCAAACTTCTATTCACTGTTGTCGTCGACACGGTGAATGACGAAATAGTGAAATCTCTCTTGACAACGAAAACGGTGGACGATGTCATTCTTCACGTTTTAGAAATATCTAATCAAAATtag
Protein Sequence: MANGMEKIEILKIEECSHDLIVDETNGIVFDMDLSQDESLVVTDSAATANKKGVVISIVTDYQCVTCQRIFQSKDMLQKHVDTCREEDDSNNMLGNIVTYDSEEEEEDEDDPLLNAEDSDSKGQKNNNEKPLIKPVPETQCHCCAEDLKTAHSGGEYKCSHCDLSFKKKASLERHDVVIHWTCDSCTCNECGSSFRDKKALNKHRYTTHGDRKIFKCDPCDTYFSRSYHLNRHIMQSGCHGNILNKFSCQVCKKDFTRKDNLREHLRTHAGTPQRQKKKCNYCPKEFFTYQQLLVHERMHTGERPVQCDLCPKTFLSPLALKKHRRVHTGEKPFECKYLAERTCAFCQRKFAARETLNRHLRTHTGEKPHVCQYCGKSFIQAAQLRAHVFHHTGENGFYCDVCDKAFNRKARLNIHKKFVHEGAIPFTCEVCDKGFMRKEDLMKHKVLHTGIKPFKCDKCSKAFSVKSSLQAHLNTHRREPPQSCVECNRVFIRQDCLMRHIRAKHRELLEDVMNEVEKKHLQTQLYNIASTAAAKMKTGKSRRLSTDELLKAIVDLLRLLIDEETLQLFGWPDAPIQDVLEAVIRRCGHEPITSETNMVFTERLRQNVKLLFTVVVDTVNDEIVKSLLTTKTVDDVILHVLEISNQN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01423083;
90% Identity: iTF_01477076;
80% Identity: -