Tsep008398.1
Basic Information
- Insect
- Trachymyrmex septentrionalis
- Gene Symbol
- bab2
- Assembly
- GCA_001594115.1
- Location
- NW:142142-178867[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5e-13 6.6e-10 37.8 0.0 1 39 437 476 437 480 0.90 2 4 3.1e-13 4e-10 38.5 0.1 2 39 492 529 491 532 0.94 3 4 1.2e-18 1.5e-15 55.8 0.0 1 45 546 591 546 591 0.96 4 4 8.1e-19 1.1e-15 56.3 0.1 1 42 598 640 598 641 0.97
Sequence Information
- Coding Sequence
- ATGACTATTGCGGCTTGGGAAAAAGCGAGGAAGGGGGGAGGATTCTCGTCGTCTCTTAGAGTCGTCGCCGCCGATGACTTTTCGATGAATCCGTCGAACACGAAAGGAAAGCCACtcgggaaaagaaaaaaaagaaaagcacTCTATCGATCTTTTCCGTTTTTCTGTTGCAGCGGCGGCATGGCCGGGCAGCACTACTGCCTGCGTTGGAACAACTACCAATCGAATATGACGTCGGTGATGCACCAGCTTCTGCAGACCGAGGCCTTCGTCGACGTCACCCTGGCGTGCAATGAGGCCTCATTAAAGGCGCACAAGGTGGTGTTGTCAGCTTGCAGCTCCTACTTCCAGAAGCTCCTGCTATCGAACCCTTGCAAACACCCGACAATCATCATGCCGCAGGACGTCTGCTTCAACGACCTCAAGTTCATCATCGAGTTCGTCTACCGCGGCGAGATTGACGTTTCGCAAGCGGAGCTTCAGTCGCTCTTGAAGACGGCCGACCAGCTAAAGATCAAGGGCCTGTGCGAGGTGCCGGAGAACAGGGACGGTCCGCCACCCGTGAGTCTGAGCTCGCCGCCGAGAGAGTCCGGCACCCCGAGATTGAACTACACGAAGCTGAAGAAGCACCATCAGAGATACAAAAGACCCAGAATCGAGCGGCCCACATTCGAGCCGCGTCCTACCGATCCGAGACACTACGATCGCTACAAAGAGGAAGAGGCTAACGATTACAGCCGTGACAACAAAGAGAACCATCGGGACTGGCAGGCTGAAGATGAAGAGTGCACGGAgacagcaacagcagcagtaGCATTGGAAACTTGCcaacgtaataataataacaataacaacaacaacGGTAACGGCACGAGTAACAACAGTGACATGTTCTGTCACACAGGGCTAGGGCATTATGGCCACCATCCGGATCCCGGAGAGGTCGATTTGCCCCCCGAGACTCAACCCACCCCACCCAGCGCCACCCTGGTCGGCACTACCATCACCCACTTGAGGGATCCGGATCATCATTCTAcagAGATTCAGAATTGCGACAGCGTCAAGATCAAGTTCGAAACGCTGCACACGATGGACTCCTCGGACACGATCGACATAGATAGTCACATGTCGGATCGGGCAAGCGTAAGCTCGAAAAACGCCGCCGACAGCGACAACATGATGATGATAACACCGGAGCTATTGGGACTGATGCCATCGGGAAGCTCCGGTCAGTCAGACTCGGGTGAGAATAACTCAAGGGGGCACAGCGGACAGTCCAGCTCGCACCATCACGGCTCGAAGTCGTGGACGCAGGAGGACATGGACGCGGCTTTAGAAGCGCTGAGGAATCACAACATGAGCCTGACGAAAGCTTCGGcaacattCGGTATTCCCTCAACGACACTATGGCAACGGGCGCATCGATTGGGCATCGACACACCGAAGAAAGACGGCCCCACGAAATCCTGGAGCGACGAGAGCTTGAACAATGCCTTAGAAGCGTTGCGTACCGGTTCTATTTCGGCTAACAAAGCGTCCAAAGCATATGGCATACCTTCCAGCACGTTGTATAAGATCGCCAGGAGGGAAGGTATCAGATTGGCCGCACCGTTCAACGCGAGTCCCACTACCTGGACACCCTCCGATCTGGACCGCGCTTTAGAAGCAATAAGATCTGGTCAGACGTCCGTACAGAGAGCGTCGACGGAATTTGGTATACCTACGGGGACTCTTTACGGAAGATGCAAGCGGGAAGGAATCGAGCTTAGTAGAAGCAATCCTACTCCATGGAGCGAAGATGCTATGACTGAAGCTCTCGAGGCCGTCAGATTAGGACACATGAGCATAAATCAAGCGGCAATCCATTATAATCTGCCGTATTCGTCACTATACGGACGCTTCAAGAGGGGCAAATACGAGGAACCCGTCGTCGGTGATATCTCGCAGGATGGTACCAGTCCACATTTCCATCAGAGCCCTAACCAGAATCACTCATCCGCCCTTCCAGATCAAATGCCTTATCCGGGCAGTTGA
- Protein Sequence
- MTIAAWEKARKGGGFSSSLRVVAADDFSMNPSNTKGKPLGKRKKRKALYRSFPFFCCSGGMAGQHYCLRWNNYQSNMTSVMHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSNPCKHPTIIMPQDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEVPENRDGPPPVSLSSPPRESGTPRLNYTKLKKHHQRYKRPRIERPTFEPRPTDPRHYDRYKEEEANDYSRDNKENHRDWQAEDEECTETATAAVALETCQRNNNNNNNNNGNGTSNNSDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSGQSDSGENNSRGHSGQSSSHHHGSKSWTQEDMDAALEALRNHNMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGSISANKASKAYGIPSSTLYKIARREGIRLAAPFNASPTTWTPSDLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVGDISQDGTSPHFHQSPNQNHSSALPDQMPYPGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00141914;
- 90% Identity
- iTF_01520386;