Pare008203.1
Basic Information
- Insect
- Pseudoatta argentina
- Gene Symbol
- bab2
- Assembly
- GCA_017607525.1
- Location
- JAANIA010001497.1:358548-396431[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.4e-13 5.2e-10 38.0 0.0 1 39 377 416 377 420 0.90 2 4 2.7e-13 3.2e-10 38.6 0.1 2 39 432 469 431 472 0.94 3 4 1e-18 1.2e-15 56.0 0.0 1 45 486 531 486 531 0.96 4 4 7.2e-19 8.4e-16 56.5 0.1 1 42 538 580 538 581 0.97
Sequence Information
- Coding Sequence
- ATGGCCGGGCAGCACTACTGCCTGCGTTGGAACAACTACCAATCGAATATGACGTCAGTGATGCACCAGCTCCTGCAGACCGAGGCCTTCGTCGACGTCACCCTGGCGTGCAATGAGGCCTCATTAAAGGCGCACAAGGTGGTGTTGTCAGCTTGCAGCTCCTATTTCCAGAAGCTCCTGCTATCGAACCCTTGCAAACACCCGACGATCATCATGCCGCAGGACGTCTGCTTCAACGACCTCAAGTTCATCATCGAGTTCGTCTACCGCGGCGAGATCGACGTTTCGCAAGCGGAGCTTCAGTCGCTCTTGAAGACGGCCGATCAGCTAAAGATCAAGGGCCTGTGCGAGGTGCCGGAGAACAGGGACGGTCCGCCACCCGTGAGTCTGAGCTCGCCGCCGAGAGAGTCCGGCACCCCGAGGTTGAACTACACGAAGCTAAAGAAGCACCATCAGAGATACAAGAGACCCAGAATCGAGCGGCCCACATTCGAGCCGCGTCCTACCGATCCGAGACACTACGATCGCTACAAAGAGGAAGAGGCTAACGATTACAGCCGTGACAACAAAGAGAACCATCGGGACTGGCAGGCTGAAGATGAAGAGTGCACGGagacagcaacagcagcagtaGCATTGGAAACTTGCcaacgtaataataataacaataacaacaaCAACGGTAACGGCACGAGTAACAACAGTGACATGTTCTGTCACACAGGGCTAGGGCATTATGGCCACCATCCGGATCCCGGAGAGGTCGATTTGCCTCCCGAGACTCAACCTACCCCACCCAGCGCTACCCTGGTCGGCACTACTATCACCCACTTGAGGGATCCGGATCATCATTCTACagAGATTCAGAATTGCGACAGCGTAAAGATCAAGTTCGAAACGCTGCACACGATGGACTCCTCGGACACGATCGACATAGATAGCCACATGTCGGATCGGGCGAGCGTAAGCTCGAAAAACGCCGCCGACAGCGACAACATGATGATGATAACACCGGAGCTATTGGGACTGATGCCATCGGGAAGTTCCGGTCAGTCAGACTCGGGTGAGAATAACTCGAGGGGGCACAGTGGACAGTCCAGCTCGCACCATCACGGTTCAAAGTCATGGACGCAGGAGGACATGGACGCGGCTTTAGAAGCGCTGAGGAATCACAACATGAGCCTGACAAAAGCTTCGGcaacatTCGGTATTCCCTCAACGACATTATGGCAACGGGCGCATCGATTGGGCATCGACACACCGAAGAAAGACGGCCCTACGAAATCCTGGAGCGACGAGAGTTTGAACAATGCCTTAGAAGCGTTGCGTACCGGTTCCATTTCGGCTAACAAAGCGTCCAAAGCATATGGTATACCTTCTAGCACGTTGTATAAAATCGCCAGGAGAGAAGGTATCAGATTGGCCGCACCGTTCAACGCGAGTCCCACTACCTGGACACCCTCCGATCTGGATCGCGCTTTAGAAGCAATAAGATCTGGTCAGACGTCCGTACAGAGAGCGTCAACAGAATTCGGTATACCTACGGGGACTCTTTACGGAAGATGCAAGCGGGAAGGAATCGAGCTTAGTAGAAGCAATCCTACGCCATGGAGCGAAGATGCTATGACTGAAGCTCTCGAGGCCGTCAGATTAGGACACATGAGCATAAATCAAGCGGCAATCCATTATAATCTGCCGTATTCGTCACTATACGGACGCTTCAAGAGGGGCAAATACGAGGAACCCGTCGTCGGTGATATCTCGCAGGATGGTACCAGTCCACATTTCCATCAGAGCCCTAACCAGAATCACTCATCCGCCCTTCCAGATCAAATGCCTTATCCGGGCAGT
- Protein Sequence
- MAGQHYCLRWNNYQSNMTSVMHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSNPCKHPTIIMPQDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEVPENRDGPPPVSLSSPPRESGTPRLNYTKLKKHHQRYKRPRIERPTFEPRPTDPRHYDRYKEEEANDYSRDNKENHRDWQAEDEECTETATAAVALETCQRNNNNNNNNNGNGTSNNSDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSGQSDSGENNSRGHSGQSSSHHHGSKSWTQEDMDAALEALRNHNMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGSISANKASKAYGIPSSTLYKIARREGIRLAAPFNASPTTWTPSDLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVGDISQDGTSPHFHQSPNQNHSSALPDQMPYPGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00141914;
- 90% Identity
- iTF_01520386;
- 80% Identity
- iTF_01476843;