Basic Information

Insect: Atta colombica
Gene Symbol: bab2
Assembly: GCA_001594045.1
Location: NW:12548-52462[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 5e-13 5.5e-10 38.0 0.0 1 39 377 416 377 420 0.90

2 4 3.1e-13 3.4e-10 38.6 0.1 2 39 432 469 431 472 0.94

3 4 1.2e-18 1.3e-15 56.0 0.0 1 45 486 531 486 531 0.96

4 4 8.1e-19 9e-16 56.5 0.1 1 42 538 580 538 581 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	5e-13	5.5e-10	38.0	0.0	1	39	377	416	377	420	0.90
2	4	3.1e-13	3.4e-10	38.6	0.1	2	39	432	469	431	472	0.94
3	4	1.2e-18	1.3e-15	56.0	0.0	1	45	486	531	486	531	0.96
4	4	8.1e-19	9e-16	56.5	0.1	1	42	538	580	538	581	0.97

Sequence Information

Coding Sequence: ATGGCCGGGCAGCACTACTGCCTGCGTTGGAACAACTACCAATCGAATATGACGTCGGTGATGCACCAGCTCCTGCAGACCGAGGCCTTCGTCGACGTCACCCTGGCGTGCAATGAGGCCTCATTAAAAGCGCACAAGGTGGTGTTGTCGGCTTGCAGCTCCTATTTCCAGAAGCTCCTGTTATCGAACCCTTGCAAACACCCGACAATCATCATGCCGCAGGACGTCTGCTTTAACGACCTCAAGTTCATCATCGAGTTCGTCTACCGCGGCGAGATCGACGTTTCGCAAGCGGAGCTTCAGTCGCTCTTGAAGACGGCCGACCAGCTAAAGATCAAGGGCCTGTGCGAGGTGCCGGAGAACAGGGACGGTCCGCCACCCGTGAGTCTGAGTTCGCCGCCGAGAGAGTCCGGCACCCCAAGATTGAACTACACGAAGCTGAAGAAGCACCATCAGAGATACAAGAGACCCAGAATCGAGCGGCCCACATTCGAGCCGCGTCCTACCGATCCGAGACACTACGATCGCTACAAAGAGGAAGAGGCTAACGATTACAGCCGTGACAATAAAGAGAACCATCGGGACTGGCAGGCTGAAGATGAAGAGTGCACGGAgacagcaacagcagcagtaGCATTGGAAACTTGCcaacgtaataataataacaataacaacaacaacGGTAACGGCACGAGTAACAACAGTGACATGTTCTGTCACACAGGGCTAGGGCATTATGGCCACCATCCGGATCCCGGAGAGGTCGATTTGCCCCCCGAGACCCAACCCACCCCACCCAGCGCCACCCTGGTCGGCACTACCATCACCCACTTGAGGGATCCGGATCATCATTCTAcagAGATTCAGAATTGCGACAGCGTCAAGATCAAGTTCGAAACGTTGCACACGATGGACTCCTCGGACACGATCGACATAGATAGCCATATGTCGGATCGGGCGAGCGTAAGTTCGAAAAACGCTGCCGACAGCGACAACATGATGATGATAACACCGGAGCTATTGGGACTGATGCCATCAGGAAGTTCTGGTCAGTCAGACTCTGGTGAGAATAACTCGAGGGGGCACAGTGGACAGTCCAGTTCGCACCATCACGGTTCAAAGTCGTGGACGCAGGAGGACATGGACGCGGCTTTAGAAGCGCTGAGGAATCACAACATGAGCCTGACAAAAGCTTCAGcaacattCGGTATTCCCTCAACGACACTATGGCAACGGGCGCATCGATTGGGCATCGACACACCGAAGAAAGACGGCCCAACGAAATCCTGGAGCGACGAGAGTTTGAACAATGCCTTAGAAGCGTTGCGTACTGGTTCCATTTCGGCTAACAAAGCATCCAAAGCATATGGCATACCTTCTAGCACGTTGTATAAAATCGCTAGGAGGGAAGGTATCAGATTGGCCGCACCGTTCAACGCGAGTCCCACTACCTGGACACCCTCCGATCTGGATCGCGCTTTAGAAGCAATAAGATCTGGTCAGACGTCCGTACAGAGGGCGTCAACGGAATTCGGTATACCTACGGGGACTCTTTACGGAAGATGCAAGCGGGAAGGAATCGAGCTTAGTAGAAGCAATCCTACGCCATGGAGCGAAGATGCTATGACTGAAGCTCTCGAGGCCGTCAGATTAGGACACATGAGCATAAATCAAGCGGCAATCCATTATAATTTGCCGTATTCGTCACTATACGGACGCTTCAAGAGAGGCAAATACGAGGAACCTGTCGTCGGTGATATCTCGCAAGATGGTACCAGTCCACATTTCCATCAGAGCCCTAACCAGAATCACTCATCCGCCCTTCCAGATCAAATGCCTTATCCGGGCAGTTGA
Protein Sequence: MAGQHYCLRWNNYQSNMTSVMHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSNPCKHPTIIMPQDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEVPENRDGPPPVSLSSPPRESGTPRLNYTKLKKHHQRYKRPRIERPTFEPRPTDPRHYDRYKEEEANDYSRDNKENHRDWQAEDEECTETATAAVALETCQRNNNNNNNNNGNGTSNNSDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSGQSDSGENNSRGHSGQSSSHHHGSKSWTQEDMDAALEALRNHNMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGSISANKASKAYGIPSSTLYKIARREGIRLAAPFNASPTTWTPSDLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVGDISQDGTSPHFHQSPNQNHSSALPDQMPYPGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00141914;
90% Identity: iTF_01520386;
80% Identity: iTF_01476843;