Basic Information

Insect: Tortrix viridana
Gene Symbol: -
Assembly: GCA_963241965.1
Location: OY725174.1:5019612-5028134[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 23 0.0074 0.59 11.4 0.6 3 23 131 152 130 152 0.96

2 23 0.39 31 5.9 0.2 1 21 528 548 528 549 0.96

3 23 5.3 4.3e+02 2.4 0.3 1 22 591 612 591 614 0.82

4 23 0.00091 0.073 14.2 0.7 3 21 625 643 623 644 0.95

5 23 0.46 37 5.7 0.3 3 23 653 674 651 674 0.91

6 23 0.0058 0.46 11.7 0.2 3 23 694 715 692 715 0.96

7 23 0.0066 0.52 11.5 2.0 1 23 721 744 721 744 0.92

8 23 0.1 8 7.8 0.0 1 23 770 793 770 793 0.90

9 23 0.015 1.2 10.4 3.4 1 23 798 820 798 820 0.97

10 23 0.015 1.2 10.4 0.3 1 23 826 849 826 849 0.95

11 23 0.0018 0.15 13.3 1.3 1 23 862 884 862 884 0.97

12 23 0.00014 0.011 16.8 1.8 1 23 933 956 933 956 0.97

13 23 0.008 0.64 11.2 1.5 1 23 1025 1048 1025 1048 0.96

14 23 0.00088 0.07 14.3 2.1 2 23 1073 1095 1072 1095 0.95

15 23 0.069 5.5 8.3 0.1 2 23 1101 1123 1100 1123 0.93

16 23 0.0079 0.63 11.3 0.2 1 21 1166 1186 1166 1187 0.95

17 23 0.00098 0.078 14.1 0.6 1 23 1197 1219 1197 1219 0.93

18 23 8.9e-05 0.0071 17.4 0.3 2 23 1311 1333 1311 1333 0.93

19 23 2.6e-07 2.1e-05 25.4 1.4 3 23 1340 1360 1339 1360 0.98

20 23 0.008 0.64 11.2 0.5 3 23 1382 1402 1380 1403 0.95

21 23 0.074 5.9 8.2 0.0 1 23 1424 1446 1424 1446 0.98

22 23 0.022 1.7 9.9 0.6 1 23 1452 1475 1452 1475 0.95

23 23 0.00025 0.02 16.0 0.7 1 23 1483 1506 1483 1506 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	23	0.0074	0.59	11.4	0.6	3	23	131	152	130	152	0.96
2	23	0.39	31	5.9	0.2	1	21	528	548	528	549	0.96
3	23	5.3	4.3e+02	2.4	0.3	1	22	591	612	591	614	0.82
4	23	0.00091	0.073	14.2	0.7	3	21	625	643	623	644	0.95
5	23	0.46	37	5.7	0.3	3	23	653	674	651	674	0.91
6	23	0.0058	0.46	11.7	0.2	3	23	694	715	692	715	0.96
7	23	0.0066	0.52	11.5	2.0	1	23	721	744	721	744	0.92
8	23	0.1	8	7.8	0.0	1	23	770	793	770	793	0.90
9	23	0.015	1.2	10.4	3.4	1	23	798	820	798	820	0.97
10	23	0.015	1.2	10.4	0.3	1	23	826	849	826	849	0.95
11	23	0.0018	0.15	13.3	1.3	1	23	862	884	862	884	0.97
12	23	0.00014	0.011	16.8	1.8	1	23	933	956	933	956	0.97
13	23	0.008	0.64	11.2	1.5	1	23	1025	1048	1025	1048	0.96
14	23	0.00088	0.07	14.3	2.1	2	23	1073	1095	1072	1095	0.95
15	23	0.069	5.5	8.3	0.1	2	23	1101	1123	1100	1123	0.93
16	23	0.0079	0.63	11.3	0.2	1	21	1166	1186	1166	1187	0.95
17	23	0.00098	0.078	14.1	0.6	1	23	1197	1219	1197	1219	0.93
18	23	8.9e-05	0.0071	17.4	0.3	2	23	1311	1333	1311	1333	0.93
19	23	2.6e-07	2.1e-05	25.4	1.4	3	23	1340	1360	1339	1360	0.98
20	23	0.008	0.64	11.2	0.5	3	23	1382	1402	1380	1403	0.95
21	23	0.074	5.9	8.2	0.0	1	23	1424	1446	1424	1446	0.98
22	23	0.022	1.7	9.9	0.6	1	23	1452	1475	1452	1475	0.95
23	23	0.00025	0.02	16.0	0.7	1	23	1483	1506	1483	1506	0.96

Sequence Information

Coding Sequence: ATGAGGTCCCGCATATCGAAGATGCTCAACACTGAGACCATCATGGCCGGGAGATTTACCTCTCGACATTTGTCGAATGGTCTGGGCTACGTCTCTTGCCGTAAAGATGATGCCCGGGCCTCCATGTGTTGTCTCAGTATCGAGCATAGTCGGCTGCTGCCCGAGGGACGGCCTAATAAAGAAATGATCACGAAAGAGCTCAGCTATGCCCTCCGGgGTGTTGAGAGTGAAAAAGACGAGGAAGAAGACGAAGAGGAAGAAATGATGGAGCGTGTCCAACAGCAGTATACCAAAGTTCCTGCCATGCCCGAAGTGTCCATTACGGTTATGCGCCCCACCGGTGAGACGTTGCATGCTCGCCAGGGCATTCAGCAGTTGGCGTCTAAAGACTGTCTCGTGTGCGGTCGTGCCTACAGGTACTCTCATAACGCTAGGCGCCACGAGCTAACAGCTCACAGTTTCGACAGGTACACTAATAAAATCAAcactaaaaaaactaaaacgcaCATGCAGCCCAAACTCAGACTTAATCCGTTCAATCCTAAAGCGCGACTCATGCCTAACCCCATTAGCCATAAAATGCAATTCCAAAAACCAATGCCGACTCGTATCATGCCGTCGAGAGTTGTCGCGCCACCAAAACCGATACCAATCAAAAATGCTAAACCTATTCACAACAATTTGCCATATCCTTTACGTATTAAAGCCTTAAAGGACTTACAAATTAAGAAGAAAGAACCACAAATTTTGAAAACGTTGCTTACATCAAAACCAGAACTCTTGGTTTCTGAACCGGAGATTATTAATTCTGGGCCAGAAAGTCCAGAAACATTGATATCAGAGCCAGAAATAGCTTCTTTCCAAGTTGAAACCATTTTGTCGGAACCAGGTTTTGATCAGAACCAGGAGGAAGAAGAAGCTGATGAGCCCCAAAATCAGAATCAGCATTACGACACTGTTGATATGGAATCTGATAATGAAATTGAGATCGCCCGGCAACAAGAGAATGACAATGAAATGGAAGACAATAACGGTGAAAACGAAGGAGATGAAATACAACATGACAATGATCACATGGAAAATATGGAAGGTGAACTAAGTGACAACGAAAACGGCCAAGAAGAGGAGGACGATGAACACGGTGAAGGAGAAATGACAATAGACGAGAGAGCTGACGTCCAAGGGGACGATGCAGAAAGAGATAACGATGAAGATAATGCAGACAGAGAGGAAGATCAAGACGGCAACGAAGAAAACGACGAAGATGAAGATTTACCCCCGGGATTAGCACCGGTTGTCGAGATTAATGAAGACATGCAAACCAACTCTTATAACAGCGAGCAAAATGAAGAAGAGGAGGACGAGCTTGATGAATCAGCTGTGAATGATACTATGGACGATGACAAAGAGCTCGATCCTGACAAGTTGTACGTGACGAAAACGCAGAGAGATTTTATTCAGAAATATAGGGACATTATTCAGCAGATCAACACAAAACGGTGTCTTTGCTGTGATAGAGAACATCCACGCAGGAAGGCTGTTATTCAACATCTTCAAAAAAATGGTCATAAAGTTCCAAAGCACACATGTTACAATTGCGTGGTCACTTTTGGTCACATAGGCGCATTACTTAGCCACATGAGAGCTAATGTTTGCACAGATTTGTGGAAGATCATCTACAACGAAAATGGAATAACTGACGATTTGGTGATTGAAGATGAGCCCAAAGACAATAAGGTCCAATATAAGGATATTTTCAATGCTAGATCCTATGCCTGTAAACTGTGTCCGGCTAAATTCCAATTGAAACAATTTATCATGAAACATGTTCTGGACGTTCATGAAGACGGGCAATCTAGGGTGCCGATGGCCTGCGTACACTGCGGGTCTCGTTTCAAAGACAAGTCTTTGTGGAAGAGACATATTCGGAACGGAGAATGCACAGTTTACATTGCATGCGACTTATGCACTGAAAGATTCGTTAATATGCAAGATTTCAACGACCACGCTCTACATGTGCACGCCGGCAGTTTCGATCCTGATAATCAAAACAAGTGCATTGATGGTCGTCCCACCGACTGTCCTTTATGCGGAAAGAAGAACAGTAACTATCCGAATTTGGTAAAACATATTAAATCGGCGCATAATGAAGATAGGCCTCATTATTGTCAACATTGCGATGCTAAATTCGAGCAAACTCCTGATCTTAACAAACACATCTATGCTGAGCACTCCGACAAAGTGATGGGCGCACAGCCAATGGAACCGGATATGTCAATTATAAAGGAGGAAGCCGAAGAGTATCATTATTCCTGCACTGAATGTAACGCTATTTTCGAAACTGTCGATGCCTGGACAGATCACCAGGTGGCTGAACATCATCAAGTCGCTCATCACTGCGATCAATGTGAAAAGAAGTTCTTGCGTCCGTCGGAGCTAGCAGAACACAAAAACACACATTTGCGAGTCAAATTTTATCCTTGCAGCGTTTGCTCAAATTCCTACAGTACTCCCCAAAAACTTTCGGAGCATGTGCAGCAAACTCATCCTGGCGCCTCAACGTTCGCCGCAGCTGAGACGGAATTCTTTTGTGACATCTGCATTCGGTCATTCAAAAGCCGTCAAGCTTACTCTAACCACATGCGTATACATGCTAAAGTGCCAACCACTAACAGGAAACCTGGAGAACCTAAAGGATTTGCTCCGCAAATTATTGGGAAGCCTATCAAACAGTTCCCTATGATCCAGCCAGGGTTGGTATCATTTAAACCAAATTGTAATGTTCCTAATGCCCCTTACTCGTGTGACATCTGCGGAAAAGGCTTTATgcataagaaaaatatatggaAACATAAGAAAGTACTGCATGCGGATCTGCTTAATGACAGAAATGATAGTGAAGAAAATACTATGCAAGCTTCTACTGAAGAAGATGAATACACTGTTGACGAAAACGGCACTGCTTTGTCCACGCCGCAGTTTAACAGTTTTAATTTCTCCAACTTTGCTAACAATATGCAACAACAGCAGCAACAGCAACAACAGTCAGCACAACCGCAGGACGCCCTACCTTTCTCGTGTGAACTTTGCTTCAAGCGGTTCCCGATTAGAACTAGTTTGTGGAAGCACAAACGAGCCAAACACGGTATCATTAACGCAAGCGCGACCGGTAATCCCGAGAATCAAGCCCAGCCATCTTCGGAAGGCGGTAGGTCTAGTTGCACGATTTGCAAGATCACATTCTCGGATAAAAAATCCTACTATCGCCATAGAAAGAATGTGCATAAATCCACTGCGCAAATGTGTAAAATATGCGGTAAGCCTCTCAACTCGACATTAGAGCTATATGAGCACTTAAAGGCTGCCCACGCAAGAGAATTATTAGGATACAATGCCAATCAGGGCACCAGCAAACAAGACATATCTCAAGAGGCGGAAGTGGAATATGACCCGGAACCCGAAGTAGCCGATCCTAGCACGGAGTATCAAGCACGTTACCCGTGTGATACATGTGGTAAACAATTTGTTGGACTCCTAGCATTACAGAATCATCAATGTATAAATCAAACTACTACAGAGCCCCAAACATTTGACTGTGAAATTTGTCACAAGAGTTATACGTCAATAGCCGCATTGAAGAGTCACCGCGGTTGGCATTTACGTTCGCCTGACGGTAAAGCCGCCGCAAATAATAGTGGTTTATGGATGCCTCAACACAAAGTTACTAGCAAAGTGAGTAAGCATGAGGTGGTAGACCCCTCCCAACTCGCACGAGTGACTCACTCGACTCCGACTGCTACTACTACTAGTAAAAGACGACTCCCACCGGAAGTAGAAGTAACCGTCGTCAATCCTAACAAAAAGATGAGGTCAGACGATTCGATGGAACTTGATCAACAAAATAGTTTAACTGGCACTTTGGAAGACCGATATTGCACTATCTGTGACAAAGAATTTACTAAACGGGCGGCTTATCAGCGCCATATGGACGAAGTTCATCAACCAAATTCTGTTTTTTGTCCGGTGTGCGATAAGAGCTTCACTCGCAAATCGACTCTGCTTGTGCATATGAAGAAGCATTACGGAGGCGACGGGGAAGGTAGTTCTAGCGCGCTAGGTCAGGCGGAAGAAGATGTGTTTGGGTGTGATGTGTGCGGAACGCAATATAACAGTGAGAACGCGTTGCGGGCGCATCGCGCGCGGCACCACGCGGAAGAGTCAGGCGAGTCTGAGGATGATGGAAACGTGCCGCTGGCGCAACCAGGCGAGTTCACTTGCGGGCAGTGCGGCGACGGCGTCGCCACGCCGCGCGACCTGATCGCCCACCGATCCATGCACGCCACCCCAACCAAGTTTTTCTGCAACATTTGCAAAGTTTACTTCGCCAGGGCTCTGGATCTGTCCTCCCACACTCGCGCGAGGCACTCTGACAATGAAAAGGTTTTCTTCCCCTGTGCCATGTGTGATCGGTTCTACATGAACAAGAAGAGTTTACAACGACACATCGAGATGTCCCACTGA
Protein Sequence: MRSRISKMLNTETIMAGRFTSRHLSNGLGYVSCRKDDARASMCCLSIEHSRLLPEGRPNKEMITKELSYALRGVESEKDEEEDEEEEMMERVQQQYTKVPAMPEVSITVMRPTGETLHARQGIQQLASKDCLVCGRAYRYSHNARRHELTAHSFDRYTNKINTKKTKTHMQPKLRLNPFNPKARLMPNPISHKMQFQKPMPTRIMPSRVVAPPKPIPIKNAKPIHNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPELLVSEPEIINSGPESPETLISEPEIASFQVETILSEPGFDQNQEEEEADEPQNQNQHYDTVDMESDNEIEIARQQENDNEMEDNNGENEGDEIQHDNDHMENMEGELSDNENGQEEEDDEHGEGEMTIDERADVQGDDAERDNDEDNADREEDQDGNEENDEDEDLPPGLAPVVEINEDMQTNSYNSEQNEEEEDELDESAVNDTMDDDKELDPDKLYVTKTQRDFIQKYRDIIQQINTKRCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFGHIGALLSHMRANVCTDLWKIIYNENGITDDLVIEDEPKDNKVQYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRVPMACVHCGSRFKDKSLWKRHIRNGECTVYIACDLCTERFVNMQDFNDHALHVHAGSFDPDNQNKCIDGRPTDCPLCGKKNSNYPNLVKHIKSAHNEDRPHYCQHCDAKFEQTPDLNKHIYAEHSDKVMGAQPMEPDMSIIKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHHQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSVCSNSYSTPQKLSEHVQQTHPGASTFAAAETEFFCDICIRSFKSRQAYSNHMRIHAKVPTTNRKPGEPKGFAPQIIGKPIKQFPMIQPGLVSFKPNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADLLNDRNDSEENTMQASTEEDEYTVDENGTALSTPQFNSFNFSNFANNMQQQQQQQQQSAQPQDALPFSCELCFKRFPIRTSLWKHKRAKHGIINASATGNPENQAQPSSEGGRSSCTICKITFSDKKSYYRHRKNVHKSTAQMCKICGKPLNSTLELYEHLKAAHARELLGYNANQGTSKQDISQEAEVEYDPEPEVADPSTEYQARYPCDTCGKQFVGLLALQNHQCINQTTTEPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKVSKHEVVDPSQLARVTHSTPTATTTSKRRLPPEVEVTVVNPNKKMRSDDSMELDQQNSLTGTLEDRYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLLVHMKKHYGGDGEGSSSALGQAEEDVFGCDVCGTQYNSENALRAHRARHHAEESGESEDDGNVPLAQPGEFTCGQCGDGVATPRDLIAHRSMHATPTKFFCNICKVYFARALDLSSHTRARHSDNEKVFFPCAMCDRFYMNKKSLQRHIEMSH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00010410;
90% Identity: iTF_00023010; iTF_00009321; iTF_00010410; iTF_01463498;
80% Identity: -