Basic Information

Insect: Tortricodes alternella
Gene Symbol: -
Assembly: GCA_947859335.1
Location: OX401976.1:12760334-12770927[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 23 0.0076 0.48 11.3 0.6 3 23 205 226 204 226 0.96

2 23 0.4 25 5.9 0.2 1 21 604 624 604 625 0.96

3 23 5.5 3.5e+02 2.3 0.3 1 22 667 688 667 690 0.82

4 23 0.00093 0.06 14.1 0.7 3 21 701 719 699 720 0.95

5 23 0.53 34 5.5 0.3 3 23 729 750 727 750 0.91

6 23 0.006 0.38 11.6 0.2 3 23 770 791 768 791 0.96

7 23 0.0067 0.43 11.4 2.0 1 23 797 820 797 820 0.92

8 23 0.1 6.5 7.7 0.0 1 23 846 869 846 869 0.90

9 23 0.015 0.98 10.3 3.4 1 23 874 896 874 896 0.97

10 23 0.016 0.99 10.3 0.3 1 23 902 925 902 925 0.95

11 23 0.0019 0.12 13.2 1.3 1 23 938 960 938 960 0.97

12 23 0.0012 0.075 13.8 4.0 1 23 1009 1032 1009 1032 0.96

13 23 0.0082 0.53 11.2 1.5 1 23 1104 1127 1104 1127 0.96

14 23 0.0009 0.057 14.2 2.1 2 23 1152 1174 1151 1174 0.95

15 23 0.071 4.5 8.2 0.1 2 23 1180 1202 1179 1202 0.93

16 23 0.0081 0.52 11.2 0.2 1 21 1246 1266 1246 1267 0.95

17 23 0.001 0.064 14.0 0.6 1 23 1277 1299 1277 1299 0.93

18 23 9.1e-05 0.0058 17.3 0.3 2 23 1391 1413 1391 1413 0.93

19 23 2.7e-07 1.7e-05 25.3 1.4 3 23 1420 1440 1419 1440 0.98

20 23 0.035 2.3 9.2 0.0 1 23 1460 1483 1460 1483 0.95

21 23 0.076 4.9 8.1 0.0 1 23 1501 1523 1501 1523 0.98

22 23 0.022 1.4 9.8 0.6 1 23 1529 1552 1529 1552 0.95

23 23 0.0009 0.057 14.2 0.7 1 23 1560 1583 1560 1583 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	23	0.0076	0.48	11.3	0.6	3	23	205	226	204	226	0.96
2	23	0.4	25	5.9	0.2	1	21	604	624	604	625	0.96
3	23	5.5	3.5e+02	2.3	0.3	1	22	667	688	667	690	0.82
4	23	0.00093	0.06	14.1	0.7	3	21	701	719	699	720	0.95
5	23	0.53	34	5.5	0.3	3	23	729	750	727	750	0.91
6	23	0.006	0.38	11.6	0.2	3	23	770	791	768	791	0.96
7	23	0.0067	0.43	11.4	2.0	1	23	797	820	797	820	0.92
8	23	0.1	6.5	7.7	0.0	1	23	846	869	846	869	0.90
9	23	0.015	0.98	10.3	3.4	1	23	874	896	874	896	0.97
10	23	0.016	0.99	10.3	0.3	1	23	902	925	902	925	0.95
11	23	0.0019	0.12	13.2	1.3	1	23	938	960	938	960	0.97
12	23	0.0012	0.075	13.8	4.0	1	23	1009	1032	1009	1032	0.96
13	23	0.0082	0.53	11.2	1.5	1	23	1104	1127	1104	1127	0.96
14	23	0.0009	0.057	14.2	2.1	2	23	1152	1174	1151	1174	0.95
15	23	0.071	4.5	8.2	0.1	2	23	1180	1202	1179	1202	0.93
16	23	0.0081	0.52	11.2	0.2	1	21	1246	1266	1246	1267	0.95
17	23	0.001	0.064	14.0	0.6	1	23	1277	1299	1277	1299	0.93
18	23	9.1e-05	0.0058	17.3	0.3	2	23	1391	1413	1391	1413	0.93
19	23	2.7e-07	1.7e-05	25.3	1.4	3	23	1420	1440	1419	1440	0.98
20	23	0.035	2.3	9.2	0.0	1	23	1460	1483	1460	1483	0.95
21	23	0.076	4.9	8.1	0.0	1	23	1501	1523	1501	1523	0.98
22	23	0.022	1.4	9.8	0.6	1	23	1529	1552	1529	1552	0.95
23	23	0.0009	0.057	14.2	0.7	1	23	1560	1583	1560	1583	0.96

Sequence Information

Coding Sequence: ATGAGTGTGAATTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGGGGCGAATTACTGCCGATTTTTCCTACCACCAGTTCGGATGTCTCGGAGCCTCACGTCCTTGCATCGAAAATCAAGGATTGCGTGGCCGTTCAGATAAACGAGAATGACGACCTGCCAACTAATGCCTGCAGGAAATGTGTGGACAATGTCAATAACTGGCATATATTTAAAACAGTATGTGAAAGGACACAAAACAAACTACAGTCTCTGATTAAAAAAGATGGCAGCCAACTAGAAGAGTTGAAAATAAAAAGTGAACCACTTTCTGATGAGGCCTATGATGATGGAGTGGTTATTGATGGGGCCTACTCCGAGGAGGCTGGGGGCAGCAAACTACAACCCGAAGGTCCTCCAATTTTGGCTTCGCTGGGACTCACGCCACGGAGTGATAAGGGCGTTGAGAGTGAAAAAGATGAGGAAGAAGCCGAAGATGAACAAATGATGGATAATGCTCAGCAGTATACCAAAGTTCCAAACATGCCAGAAGTGTCCATCACAGTGATGCGTCCCACTGGCGAGACCCTGCACGCTCGTCAAGGCATCCAACAGTTAGCGTCCAAAGATTGTCTCGTGTGTGGCCGCGCTTACAGGTACTCGCACAATGCTAGGCGACACGAGCTCACCGCTCACAGCTTTGACAGATATACAAATAAGATTAATACTAAGAAGTCCAAAACGCACATGCAACCAAAACTCAGACTCAATCCGTTCAACCCGAAAGCGCGTCTCATGCCTAATCCAATTAACCACAAAATGCAATTCCAAAAGCCGATGCCGACTAGAATCATGCCTTCAAGAGTTGTGGCGACACCTAAACCGATACCAATCAGACATAGTAAACCTGTTCACAATAATCTACCATATCCTTTGCGTATAAAAGCACTGAAAGATTTACAAATCAAGAAAAAGGAACCGCAAATTCTGAAAACTTTACTGACGTCTAAACCAGAACTCTTAGTTTCTGAGCCAGAAATTATTAATTCCGGTCCTGAAAGTCCGGAAACTTTAATTTCCGAGCCAGAAATTGCGTCGTTCCAAGTTGAAACCATTTTGTCTGAACCAGCCTTTGATGAAAACCAGGATGAAGAAGAGGCTGATGAATCCCAAAATCAAAACCAAAATTATGACACTGTGGATATGGAATCCGATAATGAAATTGAAATCGCTCGACAACAAGAGAACGACGGAGAAATGGAAGATATTAACGGTGAGCAAGAAGGTGATGAAATTCAACATGACAATGAACAGATCGAAAATATGGACGGTGAAATGAGTGACAACGAGAACGGCCATCAGGAGGAGGACGATGAACACGGTGATAGTCACGGCGATATGACAATAGATGAGCATATTGACGTCGAAGGTGGTGATGCCGATAGGGATAACGATGAAGATAATGTAGAAAAAGAGGAAGATCAAGATGGGAACGAAGAAAACCAAGAAGATGAAGACCTTCCCCCAGGATTAGCGCCGGTAGTGGAGATTAACGAAGACATGCAAACTAACTCGTATAACAGCGAGCAGAACGAAGAAGAAGAGGAAGAGCTTGATGAATCAGCTGCCAATGATACGATGGATGAGGAAAAAGAGCTCGACCCAGACAAGCTTTACGTTACAAAAACGCAGAGAGATTTTATTCACAAGTACAGAGACATTATTCAACAGATAAACACAAAGCGCTGTCTCTGCTGTGACAGGGAGCATCCACGCAGAAAGGCTGTTATTCAGCATCTACAGAAGAATGGTCATAAGGTCCCGAAGCATACGTGTTACAACTGCGTAGTTACTTTTGGTCACATTGGCGCATTGCTCAGCCACATGAGGGCTAACGTTTGCACTGACTTGTGGAAGATAATTTACAATGAAAATGGAATAACTGATGATTTGGTTATCGAGGATGAGCCCAAAGATAATAAGGTGCAGTATAAGGATATTTTCAATGCTAGATCGTATGCCTGTAAACTATGTCCGGCAAAGTTCCAATTAAAACAGTTTATAATGAAACACGTTCTGGATGTTCATGAAGATGGTCAATCAAGGATACCAATGGCCTGTGTACATTGCGGGTCTAGGTTCAAAGATAAATCCCTGTGGAAGAGACACATTCGGAACGGAGAATGTACAGTTTACATTGCTTGCGACCTATGCACTGAAAAATTCGTGAATATGCAGGACTTCAATGACCATGCTTTACATGTACACGCTGGCAGTTTCGATCCTGATAACCAAAATAAATGCATTGATGGCCGACCCACCGATTGTCCTTTATGCGGAAAGAAGAACAGTAACTACCCGAATTTGGTGAAACATATAAAATCCGCGCACAACGAGGATAGACCTCATTACTGTCAACATTGTGATGCTAAATTCGAGCAAACACCTGATCTTAATAAGCACATTTACGCCGAACACTCCGATAAAGTGATGGGTGCGAATTCTATGGAACCAGATATGTCAATTATCAAGGAAGAAGCCGAAGAGTATCATTACTCCTGCACTGAATGTAACGCTATCTTCGAAACTGTTGACGCGTGGACTGACCACCAAGTGGCTGAACATGACCAAGTCGCTCATCACTGCGACCAGTGTGAAAAGAAGTTTTTGCGCCCGTCAGAACTCGCGGAACACAAGAACACACATTTACGGGTAAAGTTTTACCCTTGCAGCGTTTGCTCTAACTCGTATAGTACTCCTCAAAAATTGTCCGAGCACGTGCAACAGTCTCACCCTGGCGCGTCAACATACGCTGCCGCTGACACTGAATTCTTTTGTGACATCTGCATTCGGTCATTCAAAAGCCGTCAAGCTTACTCTAATCACATGCGTATACATGCTAAAGTGCCCACCACTAACAGAAGACCTGGAGAGCCCAAAGGGTTCGCTCCACAAATTATTGGGAAGCCTATTCGTCAGTTCCCTATGATTCAACCGGGATTGGTATCCTTCAAGCCCAATTGCAATGTTCCTAACGCTCCATACTGTTGTGACATTTGTGGAAAGGGATTTATGCATAAGAAAAATATATGGAAGCATAAGAAAGTGTTGCACGCGGACCTCCTTAATGAGAGAAATGACAGTGAAGACAACACTATGCAAGCATCTACAGAAGAAGATGAATACAATGTAGATGAAAATGGGACTGCGTTGTCCACCCCACAGTTTAACAGTTTTAATTTTTCGAGCTTTGCCAATAATATGCAACAACAGCAACAACAACAGCAACAACAACAGACGCCACAAACACAACATGAAGCCCTGCCTTTTTCGTGTGAACTTTGCTTCAAACGGTTCCCGATAAGAACGAGTTTGTGGAAGCACAAGCGAGCCAAACACGGTATCATTAACGCAAGCGCGACCGGCAATCCCGAGAATCAAGCCCAGCCATCTTCCGAAGGAGGCAGATCCAGTTGCACGATTTGCAAGATCACATTCTCTGATAAAAAATCTTACTATCGCCACAGAAAGAATGTGCACAAATCTACTGCGCAAATGTGTAAAATATGTGGTAAACCACTAAACTCAACGTTAGAGTTATATGAACACTTAAAGGCTGCTCATGCACGAGAATTATTAGGATATAACGCTAATCAAGGAACTAGTAAAGCACAAGATGTATCTCAAGAGGCGGATATGGAATATGAAGTTAAAACAGAAGTAACTGATCCTAGCGCGGAGTATCAGGCTCGTTACCCGTGCGATACTTGTGGGAAACAATTTGTCGGGCTTCTAGCATTACAGAACCATCAATGTATCAACCAAACTTCTACGGAGCCTCAAACATTCGACTGTGAAATATGCCACAAGAGTTACACATCGATAGCCGCGTTGAAGAGTCATCGCGGTTGGCATTTACGCTCGCCTGATGGTAAAGCGGCTGCGAACAACAGTGGCTTATGGATGCCTCAGCACAAAGTCACTACCAAAGTGAGTAAGCACGAGGTCGTCGACCCCTCTCAACTCGCAAGAGTGACTCACTCGACACCCATCGCCACGGCAACGACTAAAAGACGACTCCCACCGGAAGTCGAAGTGACCGTGGTCAATCCAAACAAAAAATTGAGATCAGACGATTCCATGGAGCTGGAACAGCAAAATAGTTTAACCGGTACTCTAGAAGATCGATACTGCACTATCTGCGACAAAGAATTTACTAAACGGGCGGCTTATCAGCGCCACATGGACGAAGTCCATCAACCCAACTCCGTGTTCTGTCCGGTGTGCGACAAAAGCTTCACCCGCAAGTCGACTCTCCTCGTGCACATGAAGAAGCATTACGGGGGCGACGGCGAGGGCAGCTCCAGCGGCCTCGGGCAGGCGGAGGACGAGGCGTTCGCGTGCGACGTGTGCGGCGCGCAGTACGGCAGCGAGGCCGCGCTGCGGGCGCACCGCGCGCGCGCGCACGCCGAGGACTCCGAGTCGGAGGAGGAGGCGCCGCCCGCGCCGCCCGGCGAGTTCACGTGCGGCCAGTGCGGCGACGGCGTGGCCACGCCGCGCGACCTCATCGCGCACCGCTCCATGCACGCCACGCCCACCAAGTTCTTCTGCAACATCTGCAAGGTGTACTTCGCGAGGGCTCTGGACCTGTCCTCGCACACCCGCGCGAGGCACTCTGACAACGAAAAAGTGTTCTTCCCTTGTGCCATGTGTGAACGCTTTTACATGAACAAAAAGAGTTTGCAACGACACATCGAGATGTCCCACTGA
Protein Sequence: MSVNYDRVCRLCLSSRGELLPIFPTTSSDVSEPHVLASKIKDCVAVQINENDDLPTNACRKCVDNVNNWHIFKTVCERTQNKLQSLIKKDGSQLEELKIKSEPLSDEAYDDGVVIDGAYSEEAGGSKLQPEGPPILASLGLTPRSDKGVESEKDEEEAEDEQMMDNAQQYTKVPNMPEVSITVMRPTGETLHARQGIQQLASKDCLVCGRAYRYSHNARRHELTAHSFDRYTNKINTKKSKTHMQPKLRLNPFNPKARLMPNPINHKMQFQKPMPTRIMPSRVVATPKPIPIRHSKPVHNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPELLVSEPEIINSGPESPETLISEPEIASFQVETILSEPAFDENQDEEEADESQNQNQNYDTVDMESDNEIEIARQQENDGEMEDINGEQEGDEIQHDNEQIENMDGEMSDNENGHQEEDDEHGDSHGDMTIDEHIDVEGGDADRDNDEDNVEKEEDQDGNEENQEDEDLPPGLAPVVEINEDMQTNSYNSEQNEEEEEELDESAANDTMDEEKELDPDKLYVTKTQRDFIHKYRDIIQQINTKRCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFGHIGALLSHMRANVCTDLWKIIYNENGITDDLVIEDEPKDNKVQYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRIPMACVHCGSRFKDKSLWKRHIRNGECTVYIACDLCTEKFVNMQDFNDHALHVHAGSFDPDNQNKCIDGRPTDCPLCGKKNSNYPNLVKHIKSAHNEDRPHYCQHCDAKFEQTPDLNKHIYAEHSDKVMGANSMEPDMSIIKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHDQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSVCSNSYSTPQKLSEHVQQSHPGASTYAAADTEFFCDICIRSFKSRQAYSNHMRIHAKVPTTNRRPGEPKGFAPQIIGKPIRQFPMIQPGLVSFKPNCNVPNAPYCCDICGKGFMHKKNIWKHKKVLHADLLNERNDSEDNTMQASTEEDEYNVDENGTALSTPQFNSFNFSSFANNMQQQQQQQQQQQTPQTQHEALPFSCELCFKRFPIRTSLWKHKRAKHGIINASATGNPENQAQPSSEGGRSSCTICKITFSDKKSYYRHRKNVHKSTAQMCKICGKPLNSTLELYEHLKAAHARELLGYNANQGTSKAQDVSQEADMEYEVKTEVTDPSAEYQARYPCDTCGKQFVGLLALQNHQCINQTSTEPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTTKVSKHEVVDPSQLARVTHSTPIATATTKRRLPPEVEVTVVNPNKKLRSDDSMELEQQNSLTGTLEDRYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLLVHMKKHYGGDGEGSSSGLGQAEDEAFACDVCGAQYGSEAALRAHRARAHAEDSESEEEAPPAPPGEFTCGQCGDGVATPRDLIAHRSMHATPTKFFCNICKVYFARALDLSSHTRARHSDNEKVFFPCAMCERFYMNKKSLQRHIEMSH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00010410;
90% Identity: iTF_01464370;
80% Identity: -