Tvir006693.1
Basic Information
- Insect
- Tortrix viridana
- Gene Symbol
- LRRFIP2
- Assembly
- GCA_963241965.1
- Location
- OY725174.1:1820258-1837708[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.5e-78 2.4e-73 247.7 19.9 1 265 120 378 120 396 0.92 2 2 0.1 2.9e+03 -2.1 6.0 133 166 434 467 421 477 0.41
Sequence Information
- Coding Sequence
- ATGGGTCGCCAATCTAAAAGTGCAACGCCTGACAATAGCGACGACGAGAGCGGAGACGCGTTCACGGACGCGGACTTCGGCGACTCCGACGACGGCTTGCACGTAGAACGCAGCGATGACTCCAACACCTCCCTCATCCCAGTCAATGAAACGGTGAACGCACAAGTCATGGAGATAGCTCACGGCGCTCGTAATGGTTTCGATGAACACGATAATACTAAGCTTAACGGGCATAGAAACAGTGATAGTGATTTGGAGTGTCGCAGCAACGGAGATACGATGCCTGAACTCCGAAGGGACTCTCATGGTGACCAGAGTCCGTCCATCGTCGGCATTCTCGGTGGCCAGCAGGATCATGCGGAGCAGCGtctagcggcgcggcgcgcggcgcgggccgaGGCGCGCGAGATTCGCATGCGCGAGCTGGAGCGGCAGCAGCGCGAACAGGAGGACCATGCGGATAAGGCCTACGACATGTACGCCGAGACGgtggggcggcgcggcggggcgCGGCTGGCGGCGCTCAGCCCGGCCGCGCTGCACTCGCCGCGGCGGGCCTCCGAGGACCCCGCCGACGACACCTTCAACGTCAAGGACCTCAGGCACGAGTTGAAAGAAGTCGAGGAGAAGTTCCGGAAAGCGATGATCTTGAATGCGCAGCTGGATAACGACAAGGCGGCGCTCGGCTACCAGCTGGAGCTGCTGAAGGACCGCATCGAGGAGTTGCACGAGGAGTACGCGCAGTTGCAGCGCGAGCACAAGGAGAAATGTTCAGCCCACGAGCGGCTAAAGCGCGAGCACGCGGCGCTAGAGCGCGAGCTACAGCTGGCGCGCGACGCGGTGCGCGCGCGGGACGCGGCGGCCGGCGACGCGGGCTACGCCTTCGTGGACGCCGCGCCCTCCGCGCCCTCCGCGCCCaacgcgccgcccgcgccgcccgcgctcgCGCTCGTCAGCCAACAGAACGAGAAGCTGCTCAACGACGCCGGGGAGGGGACGCTCGACGTGCGGTTGCAGAAGCTGCTGAGCTCCAAGCAGAGCCTGGAGGCCGAGGTGCGCCGGCTCAAGCTGCAGCTCAACGAGGAGCGGCACAACGGCGACGCGCGCCAGGCCGACACGCAGCTCGAGACAGAGTTGGAGGCCCTGCGCAAGTGCGCGGCGGAGGCgaaggcgcgcgcggcgcgcggggaGGCCGAGGCGGCGCTGCaggccgcggccgccgcgcgcctcgCCGCGCAGCTCGGCCGCCTGCGCGCGCAGCACGACGCGCGCGACGGCGCCGAGGAGCAGCTCAAGCAGGAGCGCCGCAAGCTGCAGAGGGAGGCAAGGGAAGCGTTAAACCGAGTCGAGGAGTTGGAGACGGAGAACAGCCACCTGACGAAGCGCCTCGACAAGCTCAAGAACGCCAAGTCGGCGCTCCTCAAGGAGCTGTGA
- Protein Sequence
- MGRQSKSATPDNSDDESGDAFTDADFGDSDDGLHVERSDDSNTSLIPVNETVNAQVMEIAHGARNGFDEHDNTKLNGHRNSDSDLECRSNGDTMPELRRDSHGDQSPSIVGILGGQQDHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRGGARLAALSPAALHSPRRASEDPADDTFNVKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHKEKCSAHERLKREHAALERELQLARDAVRARDAAAGDAGYAFVDAAPSAPSAPNAPPAPPALALVSQQNEKLLNDAGEGTLDVRLQKLLSSKQSLEAEVRRLKLQLNEERHNGDARQADTQLETELEALRKCAAEAKARAARGEAEAALQAAAAARLAAQLGRLRAQHDARDGAEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00772899;
- 90% Identity
- iTF_00009044;
- 80% Identity
- -