Ahol014583.1
Basic Information
- Insect
- Acleris holmiana
- Gene Symbol
- LRRFIP2
- Assembly
- GCA_949316455.1
- Location
- OX438766.1:2315801-2334355[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.3e-77 2.4e-72 245.1 22.2 1 265 124 383 124 410 0.89 2 2 1 4.4e+04 -5.4 11.5 125 164 431 470 388 481 0.53
Sequence Information
- Coding Sequence
- ATGATGCTAATCATGGGCCGCCGCCAATCCAAAAGTGCAACGCCTGACAATAGCGACGACGAGAGCGGAGACGAGTTCACGGACGCGGATTTCGGCGACTCCGACGACGGCACACATGTAGAACGTAGCGATAACTCCAACACCTCCCTCATCCCAGTCAATGAAACGGTGAACGCACAAGTCATGGAGATAGCTCACGCTCGTAATGGTTTCGATGAACACGATCATACTAAGCTTAACGGGCACAGAAACAGTGATAGTGATTTGGAGTGTCGCAGCAACGGAGAAACTATGCCTGAACTCCGGAGGGACTCCCACGGTGACCAGAATCCGTCCATCGTCGGCATTCTTGGTGGCCAGCAGGatcatGCGGAGCAGCGTctagcggcgcggcgcgcggcacgGGCCGAGGCGCGAGAAATCCGCATGCGCGAGCTGGAGCGGCAGCAGCGCGAACAAGAAGACCATGCGGACAAAGCCTACGATATGTATGCCGAGACGGTGGGGCGGCGCGGCGGGTCGCGGCTGGCGGCGCTCAGCCCGGCGGCGCTGCACTCGCCCCGGAGAGCCTCCGAGGACTCCGCCGACGACACCTTCAACGTCAAAGACCTCAGGCACGAGTTGAAAGAAGTCGAGGAGAAGTTCCGGAAGGCGATGATCTTGAACGCGCAGCTGGATAACGACAAGGCGGCGCTAGGGTACCAGCTGGAACTGCTAAAGGACCGCATCGAGGAGCTGCTCGAGGAGTACGCGCAGTTGCAGCGCGAGCACAAGGAGAAATGTTCAGCACACGAGCGGCTAAAGCGCGAGCACGCTTCGTTGGAGCGGGAGCTGCACGCGGCGCGCGACGCGGTGCGCGCGCGCGACTCGGCCGCCGGCGACGCGGGCTTCGCCTTCGTggacgccgcgcccgccgcgcccgccaccAACGGGGActgcgcgcccgcgccgccctcgCTCGCTCTGGTCAGCCAACAGAACGAGAAGCTGCTCAATGACGCCGGGGAAGGGACGCTCGACGTGCGGTTGCAAAAGCTGCTGAGTTCCAAGCAGAGTCTGGAGGGCGAGGTGCGGCGCCTTAAGCTGCAGCTGAACGAGGAGCGACACAACGGCGACGCGCGCCAGGCTGACGCCGCGCTGGAGACCGAGCTGGAGGCGCTCCGCAAGTCGTCGGCGGAGGCGAaggggcgcgcggcgcgggccgAGGCAGAGGCGGCGCTGCAGGCGGCCGGCGCCGCGCGCCTCGCCGCGCAGCTGTCCCGGCTGCGCGCGCAGCACGACGCGCGCGACGACGCCGAGGAGCAGCTCAAGCAGGAGCGCCGCAAGCTGCAGCGGGAGGCAAGGGAAGCGTTGAACCGGGTCGAGGAGCTGGAGACGGAGAACAGCCACCTGACCAAGCGGCTGGACAAGCTCAAGAACGCCAAGTCCGCGCTGCTCAAGGAGCTGTGA
- Protein Sequence
- MMLIMGRRQSKSATPDNSDDESGDEFTDADFGDSDDGTHVERSDNSNTSLIPVNETVNAQVMEIAHARNGFDEHDHTKLNGHRNSDSDLECRSNGETMPELRRDSHGDQNPSIVGILGGQQDHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRGGSRLAALSPAALHSPRRASEDSADDTFNVKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELLEEYAQLQREHKEKCSAHERLKREHASLERELHAARDAVRARDSAAGDAGFAFVDAAPAAPATNGDCAPAPPSLALVSQQNEKLLNDAGEGTLDVRLQKLLSSKQSLEGEVRRLKLQLNEERHNGDARQADAALETELEALRKSSAEAKGRAARAEAEAALQAAGAARLAAQLSRLRAQHDARDDAEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00772899;
- 90% Identity
- iTF_01464177;
- 80% Identity
- -