Tlat016777.1
Basic Information
- Insect
- Tipula lateralis
- Gene Symbol
- grn
- Assembly
- GCA_963932295.1
- Location
- OZ010737.1:83161148-83183532[+]
Transcription Factor Domain
- TF Family
- zf-GATA
- Domain
- zf-GATA domain
- PFAM
- PF00320
- TF Group
- Zinc-Coordinating Group
- Description
- This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.3e-14 7.3e-10 39.4 4.3 1 33 406 437 406 439 0.98 2 2 2.8e-17 2.2e-13 50.6 8.8 1 35 464 497 464 498 0.97
Sequence Information
- Coding Sequence
- ATGCCAATTGTGCCGAAACCAGCTGTTTCCAAATTAACTTCACCTATAGTAAATCATCCAAAGattgaTGTACAAGAGATGAAAGAAGTTAAACCAAAACTAGAAAACTCACCTGAGTGTCAACAACCACAAGAAGAAATATCACATGTGATATTGAAACAAGAAACAACAGCATCTGCTTTACCAACAACAGTAATTACAACTCCTCGGACCCGAATGATAACAACGGCTGGGCATATaagAGAAGTAAATGATCCACAAGAGACAATACAGGAGCATGGCGAATCATACGACCAGCAGGAGTATCAAACTATTAATACAAATGTTGAAGAACAAAATTATGCGTACGAGCAAGAGGTGAGAAGCCGCCGGCCAACCCTTCAAATTGTATCACCGGACTTAAATAAACCAACGAAACGCAGTGATAGCGAAGAACGGGAACAAATCGAACATCAAACCGTAGAAGAAGTACAACATCAACAGCGGCAGCAGCAGCCACAACCCCAACATCAAACAGTATATGTACAAGAACATGTTCCCCCCGAAGAGGTTGAAAATTTGCAATATGTGAATCAAACGGCAATACGATACGAATCTGAGGATCGTTATCGATATCCTTTCCATGTGCAACAAACACAACAAACCGAAGAAATAAAGACATTAGATCCGAACGGCCATCATCCGCAAGAGATTCATATTTATCATACAACAGAAACACATCAACAGGACGAAGGTCAAGTGGTGGAAATCCAAAACGATTCGAAAGCCCACTATACAAATTTAGAACCGGTTGCTCCAATACCGtcccaacaaaattattatatcggATCAGATGGTTACCAAACAGCTCACAATTACGTGTATTTACCAACGAACAAAGATTTTCCACCGTACCATTCGAGTAGTCCAAATCACATTTTGTACAAAGATCCAGTAATGGTTTCAACTAATAAACCACCTATTTCATACCTATTGAATAGTTCACAAACGATGTACGATCCAGTATCTGTTGCATCGTCATCACCGTCAACTCAGCAATATAATTATACTAAACATGATCCACAATTTTGGCCACATGGTGGTGGTATCGAGTTTCAAACGTACAACGGTATCATCTTAGAAAATCATCCACAATCGGAATATACGGTAAATAGTTCGTGGCCGATCGGTGAAACATACGAATCAAATATTATATCAGCTCCCGACGATAAACAATGTGTGATGTGTGGTGGAAATACAACACCACTATGGCGTCGCGATGGTTCGGGACACATGCTATGCAATGCATGTTCGCTGCATACACGAAAACATCCCGGTGAAAATCGTAATCCGCATcgtaatcaaaaaattaagtcaCCATCGTCGCAAGGAAATCGACGCGGTGCAACATGCGCCAATTGTCAAACCACCAATACAACATTGTGGCGACGCAATTGTCAAGGCGAACCCGTTTGCAATGCGTGtggattgtattttaaattgcaCAATGTCAATCGGCCGTTGAGTATGAAAAAGGAAGGCGTCCAAACGCGTAAACGTAAACCAAAGAGTACGAGCACATCTagtcaaatacaaaaaaatgcgtacaatgataaaattttacCGCCAATTTATCCGTCACAAATGCATAATATGCCAACGGAAATGAAAATTGCGATATCGCAAGCtaaccaacaacaacaccaacagCAAGCGGTATTGGCGCAGCAGGCTCAAGATATGCATGCTGCTCAAGCCCAGGAACATCACTATATAAATACACCACAAAGTCATTCGCCTCATTTGCCGAGCGCCAGCAATTTAAACCGCCACATGACTTCAGCtgTTCCACCAATTGATAGTTCCTCCCGTAACATAAACGGAGAAATCACTAGTGTTATAACCAGTACCGCTATTGCCGACCGATCATCAACAAATCAACAATAA
- Protein Sequence
- MPIVPKPAVSKLTSPIVNHPKIDVQEMKEVKPKLENSPECQQPQEEISHVILKQETTASALPTTVITTPRTRMITTAGHIREVNDPQETIQEHGESYDQQEYQTINTNVEEQNYAYEQEVRSRRPTLQIVSPDLNKPTKRSDSEEREQIEHQTVEEVQHQQRQQQPQPQHQTVYVQEHVPPEEVENLQYVNQTAIRYESEDRYRYPFHVQQTQQTEEIKTLDPNGHHPQEIHIYHTTETHQQDEGQVVEIQNDSKAHYTNLEPVAPIPSQQNYYIGSDGYQTAHNYVYLPTNKDFPPYHSSSPNHILYKDPVMVSTNKPPISYLLNSSQTMYDPVSVASSSPSTQQYNYTKHDPQFWPHGGGIEFQTYNGIILENHPQSEYTVNSSWPIGETYESNIISAPDDKQCVMCGGNTTPLWRRDGSGHMLCNACSLHTRKHPGENRNPHRNQKIKSPSSQGNRRGATCANCQTTNTTLWRRNCQGEPVCNACGLYFKLHNVNRPLSMKKEGVQTRKRKPKSTSTSSQIQKNAYNDKILPPIYPSQMHNMPTEMKIAISQANQQQHQQQAVLAQQAQDMHAAQAQEHHYINTPQSHSPHLPSASNLNRHMTSAVPPIDSSSRNINGEITSVITSTAIADRSSTNQQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01460809; iTF_01455342; iTF_01459152; iTF_01457016; iTF_01054905; iTF_01054002; iTF_01052857;
- 90% Identity
- -
- 80% Identity
- -