Thel016067.1
Basic Information
- Insect
- Tipula helvola
- Gene Symbol
- grn
- Assembly
- GCA_963556165.1
- Location
- OY744481.1:127968070-127969977[+]
Transcription Factor Domain
- TF Family
- zf-GATA
- Domain
- zf-GATA domain
- PFAM
- PF00320
- TF Group
- Zinc-Coordinating Group
- Description
- This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.7e-14 2.4e-09 39.5 4.3 1 33 391 422 391 424 0.98 2 2 2.6e-17 7.1e-13 50.7 8.8 1 35 449 482 449 483 0.97
Sequence Information
- Coding Sequence
- ATGAAAGAAGTTAAACCAAAACTGGAAAACCACTCACCTGAGTGTCATCAACCACAAGAAGAAATATCACATGTGATATTGAAACAAGAACCAACGGCATCTGCTTTACCAACAACAGTAATTACAGCTCCTCGGACCCGAATGATAACAACGGCTGGACATATAAGGGAGGTTAACGATCCACAAGAAACAATACAAGAGCATACCGAATCATACGAACAACAAGAGTACCAAACGATCAATACAAACGTTGAAGAACAAAATTATGCTTACGAACAAGAGGTGAGACACCGCCGGCCAACAATTCAAATTGTAACACCAGAATTAAGTAAATCGTCGAACCGGAGCGATAGTGAAGAACGGGAACAGATTGAGCAACAAGCACAATCCGTGGAAGAAGTACAAAAccaacagcagcagcagcaacagCAACAACACCAGCAACCACCGCCCCAACATCAAACTGTGTATGTACAAGAACACGTTATCGCCGAAGACGTCGAAAATTTGCGTTACGTGAATCCGACGGCGATACGGTACGAACCAGAAGACCGTTATCGGTATCCACCATTTCATGTTCAACAAACGCAACAAGccgaagaaataaaaacaatagatCCGAATGGTCATCACCCGCAAGAGATTCATATTTATCATACGACGGAAACCCACCAACAGGAGGAAGGTCAAGTGGTAGAAATACAAAACGATTCGAAAGCCCATTATACAAATCTAGAACCGGTTGTGACGCTACCgacaacacaaaattattttatcggaGCGGATGGTGGCTACCAAACCACAGGACATAATTATTCGTATTTAGCACAGAGCAAAGATTTTCAGCCATACCATTCGAGTAGTCCAAATCCAGTGCTGTACAAAGATCCTATAATGGTTTCGGCCAATAAACCACCACATTCTTACCTATTGAATAGTACCCAGTCAATGTATGATCCAGTGTCCGTGGCCTCTTCATCACCATCTACTCAACAATACAGTTATGCCAAGCATGATCCAAATTTTTGGCCACACTCCAGCATTGAGTTCCAGCCATACAATGGCATAATCTTAGAAAATCATTCACAAACGGAATATGTCGTAAACGGTGCATGGCCCATCACCGAATCATACGATACAAATATTATAGCCGCCCCCGAAGATAAACAATGTGTTATGTGTGGCGGCAATACAACACCGTTATGGCGTCGTGATGGTTCCGGCCATATGTTATGTAATGCATGTTCGCTGCATACGCGAAAACATCCGGGTGAAAATCGTAATCCACATCggaatcaaaaaattaaatcacccTCGTCACAAGGAAATCGTCGCGGTGCAACATGTGCAAATTGTCAAACAACAAATACAACATTGTGGCGTCGCAATTGTCAAGGTGAACCGGTGTGTAACGCAtgcggtttatattttaaattgcataatgTTAATCGGCCGTTGAGTATGAAAAAGGAGGGCGTACAAACGCGTAAACGTAAACCAAAGAGTACGAGTGCAACTAGTCAAATACAAAAGAGTCCGTACAGTGATAAAATTTTACCGCCAATTTATCCGTCACAAATGCATAGTATGCCGGCTGAAATGAAAATTGCGATATCGCAGGCAAATCAACAGCATCATCAgcaacagcagcagcagcaacaacagcAGCAACAACAGCAGGCAACAATGGCACAGCAGGTGCAAGATATGCATGTTGCTCAAGCGCAGGAGCATCATTATATAAATAGTATTGCACCGCAGAGTCATTCACCGCATTTGCCGAGCGCCAGTAATTTAAATCGGCACATGACTTCAGCGTAA
- Protein Sequence
- MKEVKPKLENHSPECHQPQEEISHVILKQEPTASALPTTVITAPRTRMITTAGHIREVNDPQETIQEHTESYEQQEYQTINTNVEEQNYAYEQEVRHRRPTIQIVTPELSKSSNRSDSEEREQIEQQAQSVEEVQNQQQQQQQQQHQQPPPQHQTVYVQEHVIAEDVENLRYVNPTAIRYEPEDRYRYPPFHVQQTQQAEEIKTIDPNGHHPQEIHIYHTTETHQQEEGQVVEIQNDSKAHYTNLEPVVTLPTTQNYFIGADGGYQTTGHNYSYLAQSKDFQPYHSSSPNPVLYKDPIMVSANKPPHSYLLNSTQSMYDPVSVASSSPSTQQYSYAKHDPNFWPHSSIEFQPYNGIILENHSQTEYVVNGAWPITESYDTNIIAAPEDKQCVMCGGNTTPLWRRDGSGHMLCNACSLHTRKHPGENRNPHRNQKIKSPSSQGNRRGATCANCQTTNTTLWRRNCQGEPVCNACGLYFKLHNVNRPLSMKKEGVQTRKRKPKSTSATSQIQKSPYSDKILPPIYPSQMHSMPAEMKIAISQANQQHHQQQQQQQQQQQQQQATMAQQVQDMHVAQAQEHHYINSIAPQSHSPHLPSASNLNRHMTSA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01458026;
- 90% Identity
- iTF_01459152;
- 80% Identity
- -