Tver105076.1
Basic Information
- Insect
- Tipula vernalis
- Gene Symbol
- grn
- Assembly
- GCA_958295665.1
- Location
- OY282559.1:292710956-292712858[-]
Transcription Factor Domain
- TF Family
- zf-GATA
- Domain
- zf-GATA domain
- PFAM
- PF00320
- TF Group
- Zinc-Coordinating Group
- Description
- This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.9e-14 3.4e-09 39.5 4.3 1 33 390 421 390 423 0.98 2 2 2.1e-17 1e-12 50.7 8.8 1 35 448 481 448 482 0.97
Sequence Information
- Coding Sequence
- ATGAAAGAAGTTAAACCAAAACTGGAAAACCACTCACCTGAGTGTCATCAACCACAAGAAGAAATATCACATGTGATATTGAAACAAGAATCAACGGCATCTGCTTTACCAACAACAGTAATTACAGCTCCTCGGACCCGAATGATAACAACGGCTGGACATATAAGGGAAGTTAACGATCCACAAGAAACAATACAAGAGCATACCGAATCATATGAACAACAAGAGTATCAAACGATTAATACAAATGTggaagaacaaaattatgctTACGAACCGGAGGTGAGACACCGCCGGCCAACAATTCAAATTGTAACACCAGAATTAAGTAAATCGTCGAACCGAAGCGATAGTGAAGAACGAGAACAGATTGAGCAACAAGCACAAACCGTGGAAGAAGTACAAAAccaacagcagcagcagcagcaacaacaccAACAACCACCGCCCCAACATCAAACCGTATACGTACAAGAACATGTTATCGCCGAAGATGTGGAGAATTTGCGTTACGTGAATCCGGCGGCGATACGGTACGAATCAGAAGACCGTTATCGATATCCATCATTTCATGTTCAACAAACACAACAAGCCGAAGAAATAAAAACCTTAGATCCGAACGGTCATCACCCGCAAGAGATTCATATTTATCATACGACGGAAACCCACCAACAGGACGAAGGTCAAGTGGTTGAAATTCAAAACGATTCGAAAGCCCACTATACAAATCTAGAACCGGTTGTGACACTACCgacaacacaaaattattttatcggaGCGGACGGTGGCTACCAAACCACGGGACACAATTACGCGTATTTACCGCCAAACAAAGATTTTCAGCCATACCATTCGAGCAGTCCAAACACAGTACTGTACAAAGATCCAATCATGGTTTCCACCAATAAACCACCCCATTCATACCTATTGAATAGTACCCAGTCAATGTATGATCCAGTGTCTGTGGCCTCTTCGTCACCATCTACTCAACAATATAGTTATGCGAAGCATGATCCACAATTTTGGCCACACTCCAGCATTGAGTTCCAATCGTACAATGGCATAATCTTAGAAAATCATCCACAAACGGAATATGTTGTAAACGGTTCGTGGCCCATCACCGAATCGTACGACACAAATATTATACCCGCCCCCGAAGACAAACAATGTGTCATGTGTGGCGGCAATACAACACCATTATGGCGTCGTGACGGTTCCGGTCACATGTTATGCAATGCATGTTCATTGCATACGCGAAAACATCCGGGTGAAAATCGTAATCCACATcggaatcaaaaaattaaatcacccTCGTCGCAGGGAAATCGTCGCGGTGCAACATGTGCCAATTGTCAAACGACAAATACAACATTGTGGCGACGTAATTGTCAAGGTGAACCGGTGTGCAATGCATGCGgtctatattttaaattgcatAATGTTAATCGGCCATTGAGTATGAAAAAGGAGGGCGTACAGACGCGTAAACGTAAACCAAAGAGTACGAGTACAACTAGTCAAATACAAAAGAGTCCGTACAGTGATAAAATTTTACCACCAATTTATCCGTCGCAAATGCATAGTATGCCGGCTGAAATGAAAATTGCAATATCGCAGGCGAATCAACAGCACCATCAGCAGCAgcaacagcagcagcaacagCAACAGCAGCAGGCAACAATGGCGCAGCAGGTGCAAGATATGCATGTTGCTCAAGCGCAGGAGCATCATTATATAAATAGTATTGCGCCGCAGAGTCATTCACCGCATTTGCCGAGCGCCAGCAATTTAAATCGGCACATGACTTCAGCGTAA
- Protein Sequence
- MKEVKPKLENHSPECHQPQEEISHVILKQESTASALPTTVITAPRTRMITTAGHIREVNDPQETIQEHTESYEQQEYQTINTNVEEQNYAYEPEVRHRRPTIQIVTPELSKSSNRSDSEEREQIEQQAQTVEEVQNQQQQQQQQHQQPPPQHQTVYVQEHVIAEDVENLRYVNPAAIRYESEDRYRYPSFHVQQTQQAEEIKTLDPNGHHPQEIHIYHTTETHQQDEGQVVEIQNDSKAHYTNLEPVVTLPTTQNYFIGADGGYQTTGHNYAYLPPNKDFQPYHSSSPNTVLYKDPIMVSTNKPPHSYLLNSTQSMYDPVSVASSSPSTQQYSYAKHDPQFWPHSSIEFQSYNGIILENHPQTEYVVNGSWPITESYDTNIIPAPEDKQCVMCGGNTTPLWRRDGSGHMLCNACSLHTRKHPGENRNPHRNQKIKSPSSQGNRRGATCANCQTTNTTLWRRNCQGEPVCNACGLYFKLHNVNRPLSMKKEGVQTRKRKPKSTSTTSQIQKSPYSDKILPPIYPSQMHSMPAEMKIAISQANQQHHQQQQQQQQQQQQQATMAQQVQDMHVAQAQEHHYINSIAPQSHSPHLPSASNLNRHMTSA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01458026;
- 90% Identity
- iTF_01459152;
- 80% Identity
- -