Tcon018493.1
Basic Information
- Insect
- Tipula confusa
- Gene Symbol
- grn
- Assembly
- GCA_963556175.1
- Location
- OY744476.1:50166383-50172287[-]
Transcription Factor Domain
- TF Family
- zf-GATA
- Domain
- zf-GATA domain
- PFAM
- PF00320
- TF Group
- Zinc-Coordinating Group
- Description
- This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3e-13 8.4e-10 39.4 4.3 1 33 380 411 380 413 0.98 2 2 2e-16 1.3e-12 48.4 8.3 1 35 438 471 438 472 0.97
Sequence Information
- Coding Sequence
- ATGAAAGAAGTTAAACCAAAACTTGAAAATTCACCTGAACGTCATCAACCACAAGAAGAAATATCACACATGATATTAAAACAAGAAACACCAGCATCTGCTCTCCCGACAACAGTAATTACTACTCCTCGAACCCGAATGATAACAACGGCTGGACATATAAGGGAAGTTAACGATCCACACGAAGCAATTCAAGAGCATACCGAATCGTATGATCAGCAAGAGTACCAAACGGTAAATACTAGTGTTGAGGAACAAAATTATGCATATGAACAGGAGGTGAGACATCGGCGGCaaacaattcaaaatgtttCACCGGATATAAATAAATCGCTAAAGCGCAGTGATAGTGAGGAACGGGAACAGATTGAGCATCATACTGTGGATGAGgcacaaaaccaacaacaccaACCACAACCACCACCGCCTCAACATCAGACCACATATGTTCAGGAACATGTTTCCGCCgaagatgttgaaaatttgcGATATGCAAATCCACCCACGATACCCTATGAACCCGAAGAACGATATCGATTTGGATTTCATGTACAACAAAGTCAACAAGGCGAAGAATTAAAAACACTAGATCCTAATGGACACCATCCACAAGAAATTCATATTTATCATACAACCGAATCACATCAACAGGACGAAGGTCATGTGGTCGAGATACAAAACGATTCTAAAGCCCATTATACTAATTTAGAACCGGTTGTTACAATACCGTCAGCACAAAGTTATTTTATCGGAGCGGATGGATACCAATCTGCAGGACACAACTATCAGTATTTACCGTCAACCAAAGATTTTCAACCATACCATTCAAGCAGTCCAAATCAAGTTTTGTACAAAGATCCAATTATGGTTTCGACCAATAAACCACCTCTTCCCTCCTACTTATTGAACAGTACACATTCAATGTATGATCCAGTGGCATCTTCGTCACCGTCCACCCAACAATATAGTTATACCAAACATGATCCACAATTTTGGCCACATGGCGGAATTGAATTTCAAACGTATAAcggtttaattttagaaaataattccCAAACAGAATATGTTGTAAATAGTACGTGGCCAATTAATGAGCCATATGAAACTAATATATTACCAACCACCGACGATAAACAATGTGTTATGTGTGGTGGAAATACTACACCGTTATGGCGTCGCGACGGTTCCGGACACATGCTATGCAATGCATGCTCGCTACATACACGAAAGCATCCGGGTGAAAATCGTAATCCACatcgaaatcaaaaaattaaatcaccatCGTCGCAAGGAAATCGTCGTGGTGCAACATGTGCCAATTGTCAAACAACAAATACTACACTGTGGCGACGTAATTGTCTAGGTGAACCCGTGTGTAATGCATGCGGGCTATATTTTAAGTTGCATAATGTTAATCGGCCGCTGAGTATGAAAAAAGAAGGTGTCCAAACGCGTAAACGTAAACCAAAGAGTACGAGCACAACTAGTCAAATACAAAAAAGTCCGTACAGTGATAAGATTTTACCATCAATTTATCCGTCGCAAATGCATAATATGCCGCAAGAGATGAAAATTGCTTTATCGCAAGCAAACcagcaacagcagcagcagcagcaacaacaacagcagcagcatcaacaacaacaagtagCACTTGTGCAGCAGGCTCAAGATATGCATGTTTCTCAGGCACAGGAGCATCATTATATAAACAGTATTGCACCCCAAAGTCACTCACCACATTTGCCTAGCGCAAGTAATTTAAATCGGCACATGACGTCAGCtgttCCACCAATCGATAGTTCCTCACGCAATATAAATGGCGAAATAACAAGTGTTATAACTAGTACGGCGACTGCAGACCGGTCATCAGCTAATCAACAATAA
- Protein Sequence
- MKEVKPKLENSPERHQPQEEISHMILKQETPASALPTTVITTPRTRMITTAGHIREVNDPHEAIQEHTESYDQQEYQTVNTSVEEQNYAYEQEVRHRRQTIQNVSPDINKSLKRSDSEEREQIEHHTVDEAQNQQHQPQPPPPQHQTTYVQEHVSAEDVENLRYANPPTIPYEPEERYRFGFHVQQSQQGEELKTLDPNGHHPQEIHIYHTTESHQQDEGHVVEIQNDSKAHYTNLEPVVTIPSAQSYFIGADGYQSAGHNYQYLPSTKDFQPYHSSSPNQVLYKDPIMVSTNKPPLPSYLLNSTHSMYDPVASSSPSTQQYSYTKHDPQFWPHGGIEFQTYNGLILENNSQTEYVVNSTWPINEPYETNILPTTDDKQCVMCGGNTTPLWRRDGSGHMLCNACSLHTRKHPGENRNPHRNQKIKSPSSQGNRRGATCANCQTTNTTLWRRNCLGEPVCNACGLYFKLHNVNRPLSMKKEGVQTRKRKPKSTSTTSQIQKSPYSDKILPSIYPSQMHNMPQEMKIALSQANQQQQQQQQQQQQQHQQQQVALVQQAQDMHVSQAQEHHYINSIAPQSHSPHLPSASNLNRHMTSAVPPIDSSSRNINGEITSVITSTATADRSSANQQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01458026;
- 90% Identity
- -
- 80% Identity
- -