Thel099417.2
Basic Information
- Insect
- Tipula helvola
- Gene Symbol
- -
- Assembly
- GCA_963556165.1
- Location
- OY744483.1:122363246-122367366[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.5e-11 1.6e-08 37.0 0.0 1 39 418 457 418 461 0.92 2 4 3.3e-12 3.5e-09 39.1 0.1 2 39 473 510 472 513 0.94 3 4 1.2e-16 1.3e-13 53.3 0.0 1 45 527 572 527 572 0.97 4 4 5.6e-18 5.9e-15 57.5 0.1 1 43 579 622 579 623 0.96
Sequence Information
- Coding Sequence
- AtgaatataacaataaaacaagAGCCGATCGAAGAGTATTATCACGATGCTGGGCATAGTGTTACAGTCAAACATGAGCCAATTGACACCGGATACAACTATGCAATACAATATGTCACAACAGCGAATGGTGAATTGTATCAGATAAAACAAGAGCCAGCAGAGAGTCTTCTTAAAACTGCGGAACATCTAAAAATTAAAGGTCTCTGTGATATAAGTGAAGAATATCCAGAACCGTGTGTTAaacggaaatttaaaaatagtaataataataatcaatcaaatcaaaggAATTATCatataagtaataataataatttgaatagtagtaacaataataataacagtaatacAGAAGACATAAATAGTAAATTAAGTAATAGAACAAATGAATCTATAAATAATCAAAGTGgtaataatttagttaaagatCATAATGATACATCACAGTCGTCACCTTTAACATTGGAAACACGTAGTAATTTAGGAAGTAGTAGTGAAAATCAACGGGATAAAAATATGACGAGTCTCGGAATGGGAATGGGCATGAATGGGTCCTTGATGGGTGTATCGATGCAGTTTTTAGATTTTGCACCTGAACCACCGGCACCATCGGCGACTCCAGTCACGGAACATATTGAGCTGACTTCAAATCTGCATGACCAGGAGATTCGACGGAAATTTGAAACGCTTCGTTCCCTGGATCCGAGTGATAATTTAGATGTGGATCGTATATCACAGCATTCAATACATCATTTGACATCATCGCCGCACCATAGCGAAAACAGTCGGGAGCATTCTCAGCCGCTTGACACTATTGTAATAAAACAGGATTTGGATCGAGATTCAGCATCACAACAGGCCCAAGAACAACTTCAACTtcaacagcagcagcaacaacagcagcaacaacaacaacagcagcagcaacaacagcagcaacaacaacaacagcagcaacAACAGCAGCAGTCAGAACAGTCACAATCTCAGTCATCACAGCATGGAAATCAGAGTAGTCGGTCTAGTAACATGGACGTGGATCAATCGAGTGGATTGGAACATGAACAATTGCATGGCATGATTATTACTCCCGAGATTGTGACTATGATGACGCCTTCTCATATGGatctTTATCAATCAGATACAAGtgaggaaaataaaatgattttaccTAGTGAAATTAAAGTAGAATATACTGAATTAACCTCTCCTAATGACCCACGGAATGCAGCTGGACCAAAAACGTGGACCCCTGATGATATGGAATCAGCACTCGATGCATTGCGAACACATCACATGAGTTTATCAAAAGCTTCCATTACATACGGTATACCACCAACAACATTATGGCAAAGAGCTCACCGTCTGGGTATTGATACCCCAAAAAAAGAAGGACCAAATAAATCGTGGAACGAAGATTCATTAAATAGTGCTCTTGATGCTTTACGTACCGGGCAAATATCAGCAAATAAGGCTTCAAAAGCGTATGGCATACCATCATCGACGCTCTACAAAATTGCAAGACGTGAAGGTATTCGACTCGCCGCACCTTTTAACGCTGCACCAACCACCTGGACGCAAGAGGATTTAGAACGTGCCTTAGAGGCAATTCGTAGTGGCCAAGCATCGGTACAGAAAGCGAGTGTGGAATTTGGTATACCAACTGGGACGTTGTATGGTAGGTGTAAAAGGGAAGGCATAGAATTGTCAAGGTCTAATCCTACGCCGTGGTCCGAAGATGCTATGATGGAGGCTTTAGAAGCTGTTCGgATTGGTCAAATGTCAATAAATCAAGCTGCTATACATTATAACCTTCCATACAGTTCATTGTACGGACGATTTAAACGAGGAAAATACGACACAACTTCAGGTGACGGTCACATGATTGATACAAGTCCGGAGAATACAtataataaCGTATTTCAGCAACAGTACAGCCCTGTCATGCTAGCACATCAGCCACAAACGCCACAACCACATCaatcacaacaacaacaacagcagcaacaacaacagcagcaacaacaacaacagcagcagcaacagCAACAACAGATACCACAATTAATAGTACAGCAGCAACAGTCACAGAATTCGAATAGTCAGCCTGAGTTATATCTAATAACaccaaaacaagaaagaagttga
- Protein Sequence
- MNITIKQEPIEEYYHDAGHSVTVKHEPIDTGYNYAIQYVTTANGELYQIKQEPAESLLKTAEHLKIKGLCDISEEYPEPCVKRKFKNSNNNNQSNQRNYHISNNNNLNSSNNNNNSNTEDINSKLSNRTNESINNQSGNNLVKDHNDTSQSSPLTLETRSNLGSSSENQRDKNMTSLGMGMGMNGSLMGVSMQFLDFAPEPPAPSATPVTEHIELTSNLHDQEIRRKFETLRSLDPSDNLDVDRISQHSIHHLTSSPHHSENSREHSQPLDTIVIKQDLDRDSASQQAQEQLQLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQSEQSQSQSSQHGNQSSRSSNMDVDQSSGLEHEQLHGMIITPEIVTMMTPSHMDLYQSDTSEENKMILPSEIKVEYTELTSPNDPRNAAGPKTWTPDDMESALDALRTHHMSLSKASITYGIPPTTLWQRAHRLGIDTPKKEGPNKSWNEDSLNSALDALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTQEDLERALEAIRSGQASVQKASVEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMMEALEAVRIGQMSINQAAIHYNLPYSSLYGRFKRGKYDTTSGDGHMIDTSPENTYNNVFQQQYSPVMLAHQPQTPQPHQSQQQQQQQQQQQQQQQQQQQQQQQIPQLIVQQQQSQNSNSQPELYLITPKQERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01454767; iTF_01051833; iTF_01459371;
- 90% Identity
- iTF_01454767; iTF_01051833; iTF_01459371;
- 80% Identity
- -