Tver143572.1
Basic Information
- Insect
- Tipula vernalis
- Gene Symbol
- -
- Assembly
- GCA_958295665.1
- Location
- OY282560.1:151872843-151876654[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.5e-11 2.3e-08 36.9 0.0 1 39 430 469 430 473 0.92 2 4 5.5e-12 5e-09 39.1 0.1 2 39 485 522 484 525 0.94 3 4 2e-16 1.8e-13 53.3 0.0 1 45 539 584 539 584 0.97 4 4 8.7e-18 7.9e-15 57.6 0.0 1 43 591 634 591 635 0.96
Sequence Information
- Coding Sequence
- ATGAATACAAATATGAATATAGCAATAAAACAAGAGCCGATCGAAGAGTATTATCATGATGCTGGACATAGTGTTACAGTCAAACATGAGCCAATTGACACTGGATACAACTATGCAATACAATATGTCACAACAGCGAATGGTGAATTGTATCAGATAAAGCAAGAGCCAGCAGAGAGTCTTCTTAAAACTGCGGAACATCTAAAAATTAAAGGTCTCTGTGATATAAGTGAAGAATATCCAGAACCGTGTGTTAaacggaaatttaaaaatagtaataataataatcaatcaaatcaaaggAATTATCatataagtaataataataatttgaatagtagtaacaataataataacagtaatacagaagacataaataGTAAATTAAGTAATAGAACAAATGAATCTATAAATAATCAAAGtggtaataatttagttaaagatCATAATGATACATCACAGTCGTCACCTTTAACATTGGAAACACGTAGTAATTTAGGAAGTAGTAGTGaaaatcaacgggataaaaatatGACGAGTCTCGGAATGGGAATGGGCATGAATGGGTCCTTGATGGGTGTATCGATGCAGTTTTTAGATTTTGCACCTGAACCACCGGCACCATCGGCGACTCCAGTCACGGAACATATTGAGCTGACTTcaaTACCACTCCATTTGTATCGTTCCATAGATCTGCACGACCAGGAGATTCGACGGAAATTTGAAACGCTTCGTTCCCTGGATCCGAGTGATAATTTGGATGTGGATCGTATATCACAGCATTCAATACATCATTTGACATCGTCGCCGCATCATAGCGAAAACAGTCGGGAACATTCTCAACCTCTTGACACTATTGTAATAAAACAGGATTTGGATCGAGATTCAGCATCACAACAGGCCCAAGAACAACTTCAACTtcaacagcagcagcaacaacagcaacaacaacaacagcaacagcagcagcagcaacaacaacaacaacagcaacaacagcagcaacagTCAGAACAGTCACAATCTCAATCATCACAGCATGGGAATCAGAGTAGTCGGTCTAGTAACATGGACGTGGATCAATCGAGTGGATTGGAACATGAACAATTGCATGGCATGATTATTACCCCCGAGATTGTGACTATGATGACTCCTTCTCATATGGatctATATCAATCAGATACAAGTgaggaaaataaaatgattttacctAGTGAAATTAAAGTAGAATATACTGAATTAACCTCTCCTAATGACCCACGGAATGCAGCTGGACCAAAAACATGGACCCCTGATGATATGGAATCAGCCCTCGATGCATTGCGAACACATCACATGAGTTTATCAAAAGCTTCCATTACATACGGTATACCACCAACAACATTATGGCAAAGAGCTCACCGTCTAGGTATTGATACCCCCAAAAAAGAAGGACCAAATAAATCGTGGAACGAAGATTCATTAAATAGTGCTCTTGATGCTTTACGTACCGGGCAAATATCAGCGAATAAGGCTTCAAAAGCGTATGGCATACCATCATCGACGCTTTACAAAATTGCCAGACGTGAAGGTATCCGACTTGCAGCACCTTTTAATGCTGCACCAACCACCTGGACGCAAGAGGATTTAGAACGTGCCTTAGAGGCAATTCGTAGTGGCCAAGCATCGGTACAGAAAGCGAGTGTGGAATTTGGTATACCAACTGGGACGTTGTATGGAAGATGTAAAAGAGAAGGCATAGAATTGTCAAGGTCTAATCCTACGCCGTGGTCCGAAGATGCTATGATGGAGGCTTTAGAAGCTGTTCggATTGGTCAAATGTCAATAAATCAAGCTGCTATACATTATAATCTTCCATATAGTTCATTGTACGGACGATTTAAACGAGGAAAATACGACACAAATTCAGGTGACGGTCACATGATTGATACAAGTCCGGAAAATACACAACAGTACAGCCCTGTCATGCTAGCACATCAGCCACAAACGCCACAACCACATcaatcacaacaacaacaacaacaacaacagcaacaacaacaacagcagcagcaacaacaacaacaacagataCCACAATTAATAGTACAGCAACAGTCACAGAATTCGAATAGTCAGCCTGAGTTATATCTAATAACACCAAAACAAGAAAGAAGTTGA
- Protein Sequence
- MNTNMNIAIKQEPIEEYYHDAGHSVTVKHEPIDTGYNYAIQYVTTANGELYQIKQEPAESLLKTAEHLKIKGLCDISEEYPEPCVKRKFKNSNNNNQSNQRNYHISNNNNLNSSNNNNNSNTEDINSKLSNRTNESINNQSGNNLVKDHNDTSQSSPLTLETRSNLGSSSENQRDKNMTSLGMGMGMNGSLMGVSMQFLDFAPEPPAPSATPVTEHIELTSIPLHLYRSIDLHDQEIRRKFETLRSLDPSDNLDVDRISQHSIHHLTSSPHHSENSREHSQPLDTIVIKQDLDRDSASQQAQEQLQLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQSEQSQSQSSQHGNQSSRSSNMDVDQSSGLEHEQLHGMIITPEIVTMMTPSHMDLYQSDTSEENKMILPSEIKVEYTELTSPNDPRNAAGPKTWTPDDMESALDALRTHHMSLSKASITYGIPPTTLWQRAHRLGIDTPKKEGPNKSWNEDSLNSALDALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTQEDLERALEAIRSGQASVQKASVEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMMEALEAVRIGQMSINQAAIHYNLPYSSLYGRFKRGKYDTNSGDGHMIDTSPENTQQYSPVMLAHQPQTPQPHQSQQQQQQQQQQQQQQQQQQQQQIPQLIVQQQSQNSNSQPELYLITPKQERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01455565;
- 90% Identity
- iTF_01455565;
- 80% Identity
- -